Variant report

Variant	rs62250916
Chromosome Location	chr3:43495299-43495300
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11926254	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs41289586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62250883	1.00[AFR][1000 genomes]
rs62250911	1.00[AFR][1000 genomes]
rs62250949	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62250950	1.00[AFR][1000 genomes]
rs62250952	1.00[AFR][1000 genomes]
rs62252988	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62253029	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428738	chr3:43491435-43651168	Strong transcription Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43443000-43495600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:43459800-43496400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:43460800-43496400	Weak transcription	HSMM	muscle
4	chr3:43466600-43496400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:43473400-43541400	Weak transcription	Aorta	Aorta
6	chr3:43474200-43504400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr3:43480600-43496400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:43489000-43496400	Weak transcription	Lung	lung
9	chr3:43492600-43504200	Weak transcription	Fetal Intestine Small	intestine
10	chr3:43493000-43495600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr3:43494000-43496800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr3:43494400-43495600	Weak transcription	K562	blood
13	chr3:43494600-43504200	Weak transcription	Primary hematopoietic stem cells	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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