Variant report
| Variant | rs62252819 |
|---|---|
| Chromosome Location | chr3:53440128-53440129 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10433618 | 0.81[AMR][1000 genomes] |
| rs17235667 | 0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56654807 | 0.83[AFR][1000 genomes] |
| rs62255993 | 0.81[AMR][1000 genomes] |
| rs62255999 | 0.81[AMR][1000 genomes] |
| rs62256049 | 0.81[AMR][1000 genomes] |
| rs62256962 | 0.81[AMR][1000 genomes] |
| rs62256964 | 0.85[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs62256965 | 0.81[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs62256966 | 0.83[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs62256968 | 0.83[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs62256969 | 0.81[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs62257004 | 0.81[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs62257007 | 0.81[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs62257009 | 0.81[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs62257011 | 0.83[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62257013 | 0.83[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62257024 | 0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6780100 | 1.00[ASN][1000 genomes] |
| rs6805246 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73080266 | 0.81[AMR][1000 genomes] |
| rs73080271 | 0.81[AMR][1000 genomes] |
| rs73080273 | 0.81[AMR][1000 genomes] |
| rs73082274 | 0.81[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7622159 | 0.81[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv876801 | chr3:53325905-53467506 | Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 12 gene(s) | inside rSNPs | diseases |
| 2 | nsv876802 | chr3:53325905-53470863 | Strong transcription Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 12 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:53437000-53440800 | Weak transcription | Primary monocytes fromperipheralblood | blood |
| 2 | chr3:53437000-53441000 | Weak transcription | Monocytes-CD14+_RO01746 | blood |
