Variant report

Variant	rs62253587
Chromosome Location	chr3:56284547-56284548
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13064390	0.87[AFR][1000 genomes]
rs13065193	0.87[AFR][1000 genomes]
rs13088316	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56272800-56291400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:56281000-56285600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr3:56281000-56286800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr3:56281800-56285200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr3:56282000-56285600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr3:56283600-56285600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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