Variant report

No.	Distal block	Cell Line	Cell type
1	chr3:55933927..55934494-chr3:56076117..56076782,3	MCF-7	breast:
2	chr3:55933542..55934094-chr3:56285214..56285975,2	MCF-7	breast:
3	chr3:53972603..53973487-chr3:55933313..55934088,2	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12108171	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17056081	0.84[EUR][1000 genomes]
rs17056090	0.84[EUR][1000 genomes]
rs17056098	0.83[EUR][1000 genomes]
rs55724092	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55967115	0.90[EUR][1000 genomes]
rs55971093	0.90[EUR][1000 genomes]
rs62253660	0.86[EUR][1000 genomes]
rs62253661	0.84[EUR][1000 genomes]
rs62253664	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62253666	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62253667	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62253668	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62253670	0.89[EUR][1000 genomes]
rs62256778	0.80[EUR][1000 genomes]
rs6763408	0.86[EUR][1000 genomes]
rs73075332	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73075334	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7618265	0.84[EUR][1000 genomes]
rs7639013	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7649504	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv876815	chr3:55895409-55979964	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:55930200-55943200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:55931800-55936600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:55931800-55938800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:55932000-55936400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:55932000-55936600	Weak transcription	Fetal Heart	heart

Quick Search: