Variant report

Variant	rs62255379
Chromosome Location	chr3:24352807-24352808
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24352056..24355550-chr3:24355635..24358135,4	K562	blood:
2	chr3:24352228..24355939-chr3:24356532..24358721,3	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs56293532	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834640	chr3:24339779-24493605	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24336400-24354000	Weak transcription	Fetal Intestine Small	intestine
2	chr3:24338400-24353200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr3:24341800-24358200	Weak transcription	Pancreas	Pancrea
4	chr3:24342000-24353000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:24342000-24354000	Weak transcription	Fetal Intestine Large	intestine
6	chr3:24342000-24356200	Weak transcription	Liver	Liver
7	chr3:24345000-24357800	Weak transcription	HepG2	liver
8	chr3:24345200-24356600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr3:24345200-24359400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr3:24347000-24354600	Weak transcription	Aorta	Aorta
11	chr3:24347400-24359800	Weak transcription	NHDF-Ad	bronchial
12	chr3:24348000-24353200	Weak transcription	Right Atrium	heart
13	chr3:24348200-24353200	Weak transcription	Psoas Muscle	Psoas
14	chr3:24348200-24354600	Weak transcription	Left Ventricle	heart
15	chr3:24348200-24357800	Weak transcription	Stomach Mucosa	stomach
16	chr3:24348200-24358000	Weak transcription	Gastric	stomach
17	chr3:24348200-24358000	Weak transcription	K562	blood
18	chr3:24348200-24359400	Weak transcription	Stomach Smooth Muscle	stomach
19	chr3:24348400-24357200	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr3:24348400-24381000	Weak transcription	Rectal Smooth Muscle	rectum
21	chr3:24349200-24355200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr3:24349600-24353000	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr3:24349600-24353600	Weak transcription	Colon Smooth Muscle	Colon
24	chr3:24350000-24359800	Weak transcription	Fetal Lung	lung
25	chr3:24350600-24358200	Weak transcription	Lung	lung
26	chr3:24352200-24355000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr3:24352200-24358000	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr3:24352600-24353400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr3:24352600-24355000	Enhancers	Adipose Nuclei	Adipose
30	chr3:24352800-24354800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr3:24352800-24357000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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