The 2.0 version of rSNPBase

Variant report

Variant rs62255924
Chromosome Location chr3:53119087-53119088
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:104 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:53107400-53123200 Weak transcription Lung lung
2 chr3:53107600-53123200 Weak transcription Right Ventricle heart
3 chr3:53107600-53123400 Weak transcription Sigmoid Colon Sigmoid Colon
4 chr3:53107600-53133600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
5 chr3:53107800-53119400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
6 chr3:53107800-53120800 Weak transcription Primary hematopoietic stem cells short term culture blood
7 chr3:53107800-53120800 Weak transcription Gastric stomach
8 chr3:53107800-53121400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
9 chr3:53107800-53121600 Weak transcription Primary B cells from cord blood blood
10 chr3:53107800-53122000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
11 chr3:53107800-53122200 Weak transcription Primary T helper naive cells fromperipheralblood blood
12 chr3:53107800-53123000 Weak transcription Placenta Placenta
13 chr3:53107800-53123200 Weak transcription Primary hematopoietic stem cells blood
14 chr3:53107800-53123200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
15 chr3:53107800-53123600 Weak transcription Brain Germinal Matrix brain
16 chr3:53107800-53123800 Weak transcription Primary T killer memory cells from peripheral blood blood
17 chr3:53107800-53126000 Weak transcription Primary T killer naive cells fromperipheralblood blood
18 chr3:53107800-53134000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
19 chr3:53107800-53151400 Weak transcription iPS-15b Cell Line embryonic stem cell
20 chr3:53108000-53121200 Weak transcription Primary B cells from peripheral blood blood
21 chr3:53108000-53123200 Weak transcription Primary T cells fromperipheralblood blood
22 chr3:53108000-53123200 Weak transcription Colonic Mucosa Colon
23 chr3:53108000-53123200 Weak transcription Skeletal Muscle Male skeletal muscle
24 chr3:53108000-53123400 Weak transcription Adipose Nuclei Adipose
25 chr3:53108000-53123800 Weak transcription Rectal Mucosa Donor 29 rectum
26 chr3:53108200-53123400 Weak transcription GM12878-XiMat blood
27 chr3:53109200-53123200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
28 chr3:53109600-53123600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
29 chr3:53111800-53121400 Weak transcription Aorta Aorta
30 chr3:53112200-53120600 Weak transcription Primary T helper cells fromperipheralblood blood
31 chr3:53116200-53123600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
32 chr3:53117400-53119200 Genic enhancers Fetal Stomach stomach
33 chr3:53117600-53119200 Enhancers HepG2 liver
34 chr3:53117600-53119400 Enhancers Esophagus oesophagus
35 chr3:53117600-53119400 Enhancers Fetal Muscle Trunk muscle
36 chr3:53117600-53119600 Strong transcription Primary T cells from cord blood blood
37 chr3:53117600-53119800 Enhancers Left Ventricle heart
38 chr3:53117600-53120200 Enhancers Fetal Heart heart
39 chr3:53117600-53130800 Strong transcription Primary mononuclear cells fromperipheralblood Blood
40 chr3:53117800-53123200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
41 chr3:53117800-53147200 Weak transcription Psoas Muscle Psoas
42 chr3:53118000-53119600 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
43 chr3:53118000-53121800 Strong transcription Thymus Thymus
44 chr3:53118000-53125200 Weak transcription Colon Smooth Muscle Colon
45 chr3:53118000-53125400 Strong transcription Monocytes-CD14+_RO01746 blood
46 chr3:53118200-53119400 Enhancers Fetal Intestine Large intestine
47 chr3:53118200-53119400 Genic enhancers Fetal Intestine Small intestine
48 chr3:53118200-53119600 Strong transcription Primary T regulatory cells fromperipheralblood blood
49 chr3:53118200-53123200 Weak transcription Duodenum Smooth Muscle Duodenum
50 chr3:53118200-53123400 Weak transcription Rectal Mucosa Donor 31 rectum

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Last update: Aug 31, 2015