Variant report

Variant	rs62257807
Chromosome Location	chr3:50929873-50929874
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11914934	1.00[AFR][1000 genomes]
rs11915036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11927030	1.00[AFR][1000 genomes]
rs62257803	1.00[AFR][1000 genomes]
rs62257814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62258667	1.00[AFR][1000 genomes]
rs62260125	1.00[AFR][1000 genomes]
rs62260128	1.00[AFR][1000 genomes]
rs62260156	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491647	chr3:50856276-51245158	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1004881	chr3:50900793-51032918	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv536568	chr3:50900793-51032918	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:50927200-50931800	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr3:50928200-50930400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
3	chr3:50928600-50930600	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr3:50928600-50931400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr3:50928800-50931200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:50929000-50930400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
7	chr3:50929000-50931400	Enhancers	H9 Cell Line	embryonic stem cell
8	chr3:50929000-50932000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr3:50929200-50930000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
10	chr3:50929400-50930000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
11	chr3:50929800-50930200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr3:50929800-50930600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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