Variant report

Variant	rs62259566
Chromosome Location	chr12:25608627-25608628
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12152340	0.83[AMR][1000 genomes]
rs1370040	0.86[AFR][1000 genomes]
rs2262594	0.81[AMR][1000 genomes]
rs2575780	0.84[AFR][1000 genomes]
rs2575783	0.83[AFR][1000 genomes]
rs2575799	0.81[AMR][1000 genomes]
rs2660779	0.81[AMR][1000 genomes]
rs2660796	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2660798	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898929	chr12:25499342-25634138	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv898930	chr12:25510311-25645817	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	esv1809069	chr12:25556661-25730319	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:25606000-25610000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:25606200-25610800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr12:25606600-25612400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr12:25608600-25608800	Enhancers	Hela-S3	cervix
5	chr12:25608600-25608800	Enhancers	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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