Variant report

Variant	rs62261689
Chromosome Location	chr3:85713819-85713820
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11708601	0.99[ASN][1000 genomes]
rs11925916	0.98[ASN][1000 genomes]
rs12714632	0.84[ASN][1000 genomes]
rs12714633	0.99[ASN][1000 genomes]
rs13060858	0.99[ASN][1000 genomes]
rs13076876	0.86[ASN][1000 genomes]
rs13080469	0.99[ASN][1000 genomes]
rs4290815	0.99[ASN][1000 genomes]
rs4355292	0.84[ASN][1000 genomes]
rs4456873	0.99[ASN][1000 genomes]
rs4461436	0.84[ASN][1000 genomes]
rs4476513	0.99[ASN][1000 genomes]
rs4490378	0.99[ASN][1000 genomes]
rs4597723	0.86[ASN][1000 genomes]
rs62261691	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62261692	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6797109	0.99[ASN][1000 genomes]
rs6809333	0.99[ASN][1000 genomes]
rs7643464	0.84[ASN][1000 genomes]
rs7643534	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9810211	0.84[ASN][1000 genomes]
rs9842249	0.84[ASN][1000 genomes]
rs9878876	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002238	chr3:85357855-85719373	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536619	chr3:85357855-85719373	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
3	nsv590905	chr3:85438564-85797093	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1010541	chr3:85505839-85870597	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv536625	chr3:85505839-85870597	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv877104	chr3:85646426-85737646	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85712800-85719600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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