Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10452032	0.81[EUR][1000 genomes]
rs1078341	0.81[EUR][1000 genomes]
rs13096480	0.81[EUR][1000 genomes]
rs1352889	0.81[EUR][1000 genomes]
rs1586827	0.81[EUR][1000 genomes]
rs2131108	0.81[EUR][1000 genomes]
rs2329021	0.81[EUR][1000 genomes]
rs4855833	0.81[EUR][1000 genomes]
rs4855845	0.81[EUR][1000 genomes]
rs4855846	0.81[EUR][1000 genomes]
rs4855848	0.81[EUR][1000 genomes]
rs4855849	0.81[EUR][1000 genomes]
rs4855885	0.80[EUR][1000 genomes]
rs55754265	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62262672	0.81[EUR][1000 genomes]
rs62262673	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62262675	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6446286	0.81[EUR][1000 genomes]
rs9824435	0.81[EUR][1000 genomes]
rs9830730	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508217	chr3:49615446-49769896	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs62262671	NICN1-AS1	cis	Thyroid	GTEx
rs62262671	AMT	cis	Thyroid	GTEx

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49637800-49653600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:49641200-49653600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:49645800-49653600	Weak transcription	Fetal Lung	lung
4	chr3:49647400-49653400	Weak transcription	Fetal Brain Female	brain
5	chr3:49647800-49653000	Weak transcription	Fetal Heart	heart
6	chr3:49648400-49662000	Weak transcription	Brain Germinal Matrix	brain
7	chr3:49648600-49653800	Weak transcription	NHDF-Ad	bronchial
8	chr3:49648600-49654000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr3:49648800-49652000	Weak transcription	Brain Angular Gyrus	brain
10	chr3:49648800-49653600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr3:49649200-49654000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr3:49649400-49652400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr3:49649400-49652400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr3:49649400-49653600	Weak transcription	Fetal Muscle Trunk	muscle
15	chr3:49649600-49653200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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