Variant report

Variant	rs62266812
Chromosome Location	chr11:82590080-82590081
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs13099760	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv555601	chr11:82585356-82672616	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv515868	chr11:82585356-82692522	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:82546200-82601200	Weak transcription	Right Ventricle	heart
2	chr11:82570200-82591600	Weak transcription	Fetal Lung	lung
3	chr11:82575600-82609200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:82579000-82590600	Weak transcription	Primary B cells from peripheral blood	blood
5	chr11:82579000-82594200	Weak transcription	Left Ventricle	heart
6	chr11:82579000-82597000	Weak transcription	Fetal Heart	heart
7	chr11:82579000-82610400	Weak transcription	Ovary	ovary
8	chr11:82579200-82591800	Weak transcription	Primary B cells from cord blood	blood
9	chr11:82579800-82592400	Weak transcription	Aorta	Aorta
10	chr11:82581200-82594600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:82581200-82595000	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr11:82581400-82592200	Weak transcription	Stomach Smooth Muscle	stomach
13	chr11:82581600-82594200	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr11:82581600-82595600	Weak transcription	Liver	Liver
15	chr11:82581600-82600600	Weak transcription	Fetal Kidney	kidney
16	chr11:82581800-82592000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr11:82581800-82594000	Weak transcription	Adipose Nuclei	Adipose
18	chr11:82584400-82592400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr11:82584600-82602400	Weak transcription	Brain Hippocampus Middle	brain
20	chr11:82584600-82609400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr11:82585400-82600600	Weak transcription	Primary T cells from cord blood	blood
22	chr11:82585600-82601200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr11:82585600-82601600	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr11:82586600-82591000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr11:82586800-82593800	Weak transcription	HUVEC	blood vessel
26	chr11:82587000-82600400	Weak transcription	Esophagus	oesophagus
27	chr11:82587200-82591400	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr11:82587600-82591800	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr11:82589000-82590800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr11:82589000-82590800	Weak transcription	Fetal Stomach	stomach

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