Variant report

Variant	rs62267807
Chromosome Location	chr3:97913924-97913925
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10511165	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12629487	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1497533	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1497534	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1497535	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16839368	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16839394	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16839408	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16839424	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55642832	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55655921	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55701454	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55844177	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55956513	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56318537	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56329277	0.97[ASN][1000 genomes]
rs56408745	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57715149	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60447690	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62267180	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62267181	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62267182	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62267183	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62267184	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62267185	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62267186	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62267187	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62267188	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62267189	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62267194	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62267195	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62267196	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62267222	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62267224	0.85[AMR][1000 genomes]
rs62268890	1.00[AMR][1000 genomes]
rs62268895	1.00[AMR][1000 genomes]
rs62269763	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62269764	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62269765	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6439692	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6771829	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6771947	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6786518	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6786750	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6795155	0.94[ASN][1000 genomes]
rs72929022	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73853705	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73853707	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73853708	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73853747	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73853752	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73855832	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7627018	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7629122	0.86[ASN][1000 genomes]
rs7636916	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:35 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869347	chr3:97742604-98051633	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv877209	chr3:97806616-98049409	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv963576	chr3:97825434-98041343	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv1004820	chr3:97852875-98169488	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv834773	chr3:97855362-98043888	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1000834	chr3:97859880-98095473	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv877210	chr3:97866177-97992964	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	esv2566065	chr3:97873442-97931531	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	esv5601	chr3:97874279-97931369	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	esv3428925	chr3:97874391-97931104	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	esv3326206	chr3:97874447-97931276	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv513059	chr3:97875075-97932953	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	esv3430659	chr3:97878961-97933659	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
14	esv3504753	chr3:97881256-97920688	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
15	esv3504754	chr3:97881256-97920688	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
16	esv3520819	chr3:97882130-97921660	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
17	esv3520820	chr3:97882130-97921660	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
18	esv1792159	chr3:97887491-97919363	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
19	esv1810766	chr3:97887491-97919363	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
20	esv1823394	chr3:97887491-97919363	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
21	esv1824074	chr3:97887491-97919363	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
22	esv1836052	chr3:97887491-97919363	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
23	esv1836766	chr3:97887491-97919363	ZNF genes & repeats Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
24	esv1850194	chr3:97887491-97919363	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
25	esv1850328	chr3:97887491-97919363	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
26	nsv442868	chr3:97887491-97919363	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
27	esv2762341	chr3:97899320-97926120	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
28	esv13127	chr3:97899419-97939393	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
29	nsv870074	chr3:97903273-97948850	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
30	esv19824	chr3:97904245-97914149	Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
31	nsv591056	chr3:97907062-97914008	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
32	nsv591062	chr3:97907553-97914008	Weak transcription Active TSS Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
33	esv2763288	chr3:97908670-97947253	Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription	TF binding region lncRNA	6 gene(s)	inside rSNPs	diseases
34	esv13073	chr3:97908878-97924741	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription	TF binding region lncRNA	5 gene(s)	inside rSNPs	n/a
35	esv2428250	chr3:97908945-97916951	Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:97912200-97914600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
2	chr3:97912600-97916000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:97913600-97914400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr3:97913800-97915400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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