Variant report

Variant	rs62269381
Chromosome Location	chr3:94923797-94923798
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:94912857..94914770-chr3:94921596..94924370,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10511149	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs11919515	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs13062403	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs13070651	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs13074906	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs13096672	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1356270	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1588971	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17563583	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2311104	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34389281	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs35015048	0.91[EUR][1000 genomes]
rs35716446	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs35957642	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs3849434	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4857021	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs62269422	0.91[EUR][1000 genomes]
rs62271133	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs62271134	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs6437730	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6781666	0.93[EUR][1000 genomes]
rs9825446	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013680	chr3:94777881-95538336	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv536653	chr3:94777881-95538336	Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv877170	chr3:94790666-95564838	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv877172	chr3:94807394-94943493	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv999347	chr3:94832290-95177750	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv877174	chr3:94867122-94983900	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
7	esv2754985	chr3:94868320-94970627	Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
8	nsv877175	chr3:94869561-95210873	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv1011235	chr3:94870789-95238299	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	esv2752668	chr3:94887527-94967365	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
11	esv2755718	chr3:94887527-94970627	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
12	esv2754322	chr3:94913312-94967365	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:94923600-94924000	ZNF genes & repeats	Pancreas	Pancrea

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