The 2.0 version of rSNPBase

Variant report

Variant rs62270404
Chromosome Location chr3:159577652-159577653
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:95 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:159569600-159577800 Weak transcription Colonic Mucosa Colon
2 chr3:159569600-159578400 Weak transcription H9 Cell Line embryonic stem cell
3 chr3:159570800-159578000 Weak transcription ES-WA7 Cell Line embryonic stem cell
4 chr3:159571000-159577800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
5 chr3:159571200-159579200 Weak transcription Sigmoid Colon Sigmoid Colon
6 chr3:159571400-159578400 Weak transcription Primary monocytes fromperipheralblood blood
7 chr3:159571400-159580200 Enhancers Cortex derived primary cultured neurospheres brain
8 chr3:159571600-159578000 Weak transcription iPS-18 Cell Line embryonic stem cell
9 chr3:159572000-159582800 Weak transcription Placenta Amnion Placenta Amnion
10 chr3:159572400-159580400 Enhancers Primary hematopoietic stem cells blood
11 chr3:159572400-159589400 Weak transcription iPS-20b Cell Line embryonic stem cell
12 chr3:159572800-159579000 Weak transcription iPS-15b Cell Line embryonic stem cell
13 chr3:159573000-159577800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
14 chr3:159573000-159580200 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
15 chr3:159573000-159580600 Enhancers Colon Smooth Muscle Colon
16 chr3:159573400-159580400 Enhancers Brain Dorsolateral Prefrontal Cortex brain
17 chr3:159573400-159582600 Enhancers Fetal Brain Male brain
18 chr3:159573800-159579400 Enhancers Lung lung
19 chr3:159573800-159579600 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
20 chr3:159574000-159582800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
21 chr3:159574200-159577800 Weak transcription Osteobl bone
22 chr3:159574200-159578600 Weak transcription Placenta Placenta
23 chr3:159574200-159582800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
24 chr3:159574600-159580200 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
25 chr3:159574600-159580400 Enhancers HUVEC blood vessel
26 chr3:159574800-159577800 Weak transcription HUES6 Cell Line embryonic stem cell
27 chr3:159574800-159578600 Weak transcription Monocytes-CD14+_RO01746 blood
28 chr3:159574800-159579000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
29 chr3:159574800-159579200 Enhancers Primary hematopoietic stem cells short term culture blood
30 chr3:159574800-159579800 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
31 chr3:159574800-159584800 Enhancers Brain Angular Gyrus brain
32 chr3:159574800-159586200 Weak transcription Ovary ovary
33 chr3:159575000-159578600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
34 chr3:159575000-159580400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
35 chr3:159575000-159580800 Enhancers Rectal Smooth Muscle rectum
36 chr3:159575200-159577800 Enhancers Fetal Muscle Leg muscle
37 chr3:159575200-159577800 Weak transcription Fetal Thymus thymus
38 chr3:159575200-159577800 Weak transcription NH-A brain
39 chr3:159575200-159578400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
40 chr3:159575200-159578400 Weak transcription Thymus Thymus
41 chr3:159575200-159578800 Weak transcription Primary B cells from cord blood blood
42 chr3:159575200-159579400 Enhancers Brain Germinal Matrix brain
43 chr3:159575200-159580200 Enhancers Breast Myoepithelial Primary Cells Breast
44 chr3:159575200-159580400 Enhancers Brain Anterior Caudate brain
45 chr3:159575400-159578200 Weak transcription Primary B cells from peripheral blood blood
46 chr3:159575400-159580400 Enhancers HMEC breast
47 chr3:159575800-159580000 Enhancers Psoas Muscle Psoas
48 chr3:159575800-159580200 Enhancers NHEK skin
49 chr3:159576000-159577800 Enhancers Pancreatic Islets Pancreatic Islet
50 chr3:159576000-159579600 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015