Variant report

Variant	rs62271371
Chromosome Location	chr3:150060982-150060983
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:150058583..150074355-chr3:150124068..150134356,51	MCF-7	breast:
2	chr3:150059766..150072041-chr3:150122033..150133129,50	MCF-7	breast:
3	chr3:150060739..150062342-chr3:150068219..150069892,2	K562	blood:
4	chr3:150028795..150040018-chr3:150059749..150069074,18	MCF-7	breast:
5	chr3:150060725..150065011-chr3:150124332..150129241,6	K562	blood:

Variant related genes	Relation type
ENSG00000196428	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1562788	1.00[ASN][1000 genomes]
rs4533673	1.00[ASN][1000 genomes]
rs4681623	1.00[ASN][1000 genomes]
rs73162478	1.00[ASN][1000 genomes]
rs9836480	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829755	chr3:149992023-150156001	Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150053000-150066600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:150053400-150062000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:150053400-150062000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr3:150053800-150061800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr3:150053800-150062000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:150054800-150061800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr3:150055000-150061800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:150055000-150061800	Weak transcription	NHEK	skin
9	chr3:150055200-150061800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr3:150058200-150062800	Weak transcription	Gastric	stomach
11	chr3:150058200-150067600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr3:150058400-150066000	Weak transcription	Aorta	Aorta
13	chr3:150058400-150067400	Weak transcription	Right Atrium	heart
14	chr3:150058600-150064600	Weak transcription	NHLF	lung
15	chr3:150059000-150062400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr3:150059400-150063400	Enhancers	NHDF-Ad	bronchial
17	chr3:150059600-150062600	Enhancers	Fetal Muscle Leg	muscle
18	chr3:150059800-150064800	Weak transcription	Left Ventricle	heart
19	chr3:150060000-150061200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr3:150060000-150063000	Weak transcription	Fetal Heart	heart
21	chr3:150060000-150063000	Weak transcription	HSMM	muscle
22	chr3:150060000-150064000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr3:150060000-150064800	Weak transcription	Adipose Nuclei	Adipose
24	chr3:150060200-150062200	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr3:150060400-150063000	Enhancers	A549	lung
26	chr3:150060400-150064200	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr3:150060600-150061600	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr3:150060600-150061600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr3:150060600-150061600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr3:150060800-150062000	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr3:150060800-150062800	Enhancers	Hela-S3	cervix
32	chr3:150060800-150064600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr3:150060800-150065200	Weak transcription	Right Ventricle	heart
34	chr3:150060800-150067400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr3:150060800-150067400	Weak transcription	Fetal Muscle Trunk	muscle

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