Variant report

Variant	rs62274205
Chromosome Location	chr3:151426721-151426722
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs62274177	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62274178	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62274180	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62274181	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62274196	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62274201	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62274203	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6771866	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7653191	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995048	chr3:151114074-151560019	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	esv3449164	chr3:151425303-151453439	Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv966962	chr3:151425308-151446146	Enhancers ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:151424800-151427800	Enhancers	NH-A	brain
2	chr3:151425600-151427000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr3:151425800-151427000	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr3:151425800-151427600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr3:151426000-151427000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr3:151426200-151427000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr3:151426200-151427000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr3:151426200-151427000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr3:151426400-151426800	Enhancers	H9 Cell Line	embryonic stem cell
10	chr3:151426400-151426800	Enhancers	Stomach Mucosa	stomach
11	chr3:151426400-151427000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr3:151426400-151427400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr3:151426600-151439000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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