Variant report

Variant	rs62275649
Chromosome Location	chr3:156361798-156361799
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:156360582..156362338-chr3:156391231..156393089,2	K562	blood:
2	chr3:156351719..156355141-chr3:156359193..156362259,3	K562	blood:
3	chr3:156360827..156364304-chr3:156391072..156393975,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SSR3-7	chr3:156359231-156383752	predAs_chen_BG181400_1

Variant related genes	Relation type
ENSG00000243926	Chromatin interaction
ENSG00000163659	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10936033	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10936034	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10936035	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12486016	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12488104	1.00[EUR][1000 genomes]
rs12497720	1.00[EUR][1000 genomes]
rs62275652	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62275654	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7609996	1.00[EUR][1000 genomes]
rs9869194	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156355800-156367800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:156359000-156362000	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr3:156360000-156376600	Weak transcription	Psoas Muscle	Psoas
4	chr3:156360200-156362200	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr3:156360400-156362000	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr3:156360400-156362000	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr3:156360400-156362000	Enhancers	Fetal Brain Male	brain
8	chr3:156360400-156362200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr3:156360400-156362200	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr3:156360400-156362200	Enhancers	Fetal Heart	heart
11	chr3:156360400-156362600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr3:156360400-156363600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:156360600-156361800	Enhancers	H9 Cell Line	embryonic stem cell
14	chr3:156360600-156361800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr3:156360600-156361800	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr3:156360600-156361800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr3:156360600-156361800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr3:156360600-156361800	Enhancers	Adipose Nuclei	Adipose
19	chr3:156360600-156361800	Enhancers	Brain Substantia Nigra	brain
20	chr3:156360600-156362000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr3:156360600-156362000	Enhancers	Right Atrium	heart
22	chr3:156360600-156362000	Enhancers	NHDF-Ad	bronchial
23	chr3:156360600-156362200	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr3:156360600-156362200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr3:156360600-156362200	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr3:156360600-156362200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr3:156360600-156362200	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr3:156360600-156362200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr3:156360600-156362400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
30	chr3:156360600-156362400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
31	chr3:156360600-156362400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr3:156360600-156362400	Enhancers	Fetal Thymus	thymus
33	chr3:156360600-156362600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
34	chr3:156360800-156361800	Enhancers	HSMMtube	muscle
35	chr3:156360800-156362000	Enhancers	Primary T helper cells fromperipheralblood	blood
36	chr3:156360800-156362000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr3:156360800-156362200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr3:156360800-156362200	Enhancers	Primary T cells fromperipheralblood	blood
39	chr3:156360800-156362200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr3:156360800-156362200	Enhancers	Thymus	Thymus
41	chr3:156360800-156362400	Enhancers	Primary B cells from peripheral blood	blood
42	chr3:156360800-156362400	Enhancers	Primary T helper naive cells from peripheral blood	blood
43	chr3:156360800-156362600	Enhancers	Primary T helper cells PMA-I stimulated	--
44	chr3:156361000-156361800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
45	chr3:156361000-156361800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr3:156361000-156361800	Enhancers	Lung	lung
47	chr3:156361000-156361800	Enhancers	Placenta Amnion	Placenta Amnion
48	chr3:156361000-156361800	Enhancers	NHLF	lung
49	chr3:156361000-156362000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr3:156361000-156362000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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