Variant report

Variant	rs62276944
Chromosome Location	chr3:98732346-98732347
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10511169	0.90[EUR][1000 genomes]
rs10511171	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10935542	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10935564	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10935610	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11708475	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11716000	0.89[EUR][1000 genomes]
rs11716007	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11716281	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11719660	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11914591	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11918243	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11918944	0.88[ASN][1000 genomes]
rs11920205	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11920327	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11922078	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11923486	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11923805	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11928233	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13069458	0.88[ASN][1000 genomes]
rs1471588	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17212369	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17213336	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17278278	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55764252	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62276861	0.89[EUR][1000 genomes]
rs62276862	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62276864	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62276869	0.88[ASN][1000 genomes]
rs62276879	0.82[ASN][1000 genomes]
rs62276883	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62276884	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62276885	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62276888	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62276909	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62279661	0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6440253	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66517942	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73140027	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73140032	0.91[EUR][1000 genomes]
rs7432439	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7629550	0.90[EUR][1000 genomes]
rs7638009	0.88[ASN][1000 genomes]
rs7642785	0.89[EUR][1000 genomes]
rs982291	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591065	chr3:98204198-98766326	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1007140	chr3:98421229-99202458	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv536663	chr3:98421229-99202458	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv877214	chr3:98445324-98738006	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv980100	chr3:98714787-98766962	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv18056	chr3:98726549-98736401	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:98726600-98740400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:98731600-98732600	Enhancers	Placenta Amnion	Placenta Amnion

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