Variant report

Variant	rs62277103
Chromosome Location	chr3:100594967-100594968
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1318859	0.83[EUR][1000 genomes]
rs1436939	0.95[ASN][1000 genomes]
rs1821795	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9653904	0.95[ASN][1000 genomes]
rs9866199	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv514163	chr3:100547342-100670846	Flanking Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100583400-100597400	Weak transcription	Colon Smooth Muscle	Colon
2	chr3:100583800-100603400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr3:100589200-100597600	Weak transcription	Adipose Nuclei	Adipose
4	chr3:100589200-100599000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr3:100593200-100601600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr3:100593600-100595400	Enhancers	Osteobl	bone
7	chr3:100593600-100596800	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:100594000-100595000	Enhancers	Muscle Satellite Cultured Cells	--
9	chr3:100594000-100595200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr3:100594400-100598000	Weak transcription	Brain Anterior Caudate	brain
11	chr3:100594400-100599000	Weak transcription	Psoas Muscle	Psoas
12	chr3:100594400-100618200	Weak transcription	Rectal Smooth Muscle	rectum
13	chr3:100594600-100596400	Weak transcription	Small Intestine	intestine
14	chr3:100594600-100597400	Weak transcription	Fetal Muscle Leg	muscle
15	chr3:100594600-100597800	Weak transcription	Fetal Lung	lung
16	chr3:100594600-100597800	Weak transcription	Stomach Smooth Muscle	stomach
17	chr3:100594600-100598600	Weak transcription	HSMMtube	muscle
18	chr3:100594600-100598800	Weak transcription	NHLF	lung
19	chr3:100594600-100616800	Weak transcription	Ovary	ovary
20	chr3:100594800-100597800	Weak transcription	Fetal Stomach	stomach
21	chr3:100594800-100598000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr3:100594800-100598000	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr3:100594800-100598400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr3:100594800-100598600	Weak transcription	NHDF-Ad	bronchial
25	chr3:100594800-100599800	Weak transcription	Hela-S3	cervix

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