Variant report

Variant	rs62278462
Chromosome Location	chr3:142333537-142333538
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11927681	0.91[EUR][1000 genomes]
rs16852649	1.00[ASN][1000 genomes]
rs17552506	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62276439	0.84[EUR][1000 genomes]
rs62276447	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62278478	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877560	chr3:142132749-142362179	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv932989	chr3:142204208-142423305	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142317200-142337600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:142317400-142337800	Weak transcription	HepG2	liver
3	chr3:142331000-142335200	Enhancers	Stomach Mucosa	stomach
4	chr3:142332000-142335600	Enhancers	Fetal Intestine Large	intestine
5	chr3:142332200-142335200	Enhancers	Fetal Intestine Small	intestine
6	chr3:142332600-142335000	Enhancers	A549	lung
7	chr3:142332800-142335000	Enhancers	Rectal Mucosa Donor 29	rectum
8	chr3:142333000-142333600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
9	chr3:142333000-142334600	Enhancers	Sigmoid Colon	Sigmoid Colon
10	chr3:142333000-142334800	Enhancers	Duodenum Mucosa	Duodenum
11	chr3:142333200-142334000	Enhancers	Colonic Mucosa	Colon
12	chr3:142333200-142337600	Weak transcription	HMEC	breast
13	chr3:142333200-142337600	Weak transcription	NHEK	skin
14	chr3:142333400-142335000	Enhancers	Small Intestine	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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