The 2.0 version of rSNPBase

Variant report

Variant rs62278488
Chromosome Location chr3:98536871-98536872
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:90 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:98503400-98576400 Weak transcription Gastric stomach
2 chr3:98513600-98539200 Weak transcription Colonic Mucosa Colon
3 chr3:98516800-98544000 Weak transcription Spleen Spleen
4 chr3:98523800-98543800 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
5 chr3:98524000-98543600 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
6 chr3:98524200-98544200 Strong transcription HSMM muscle
7 chr3:98525600-98552400 Weak transcription Right Ventricle heart
8 chr3:98526200-98543200 Weak transcription Lung lung
9 chr3:98526400-98538200 Weak transcription GM12878-XiMat blood
10 chr3:98526400-98539200 Weak transcription iPS-15b Cell Line embryonic stem cell
11 chr3:98526400-98539400 Weak transcription Fetal Brain Male brain
12 chr3:98526400-98542800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
13 chr3:98526400-98544200 Weak transcription Brain Angular Gyrus brain
14 chr3:98526400-98545000 Weak transcription Psoas Muscle Psoas
15 chr3:98526600-98537400 Weak transcription Sigmoid Colon Sigmoid Colon
16 chr3:98526600-98539000 Weak transcription Colon Smooth Muscle Colon
17 chr3:98526600-98540000 Weak transcription Fetal Thymus thymus
18 chr3:98527000-98538600 Weak transcription Primary T cells from cord blood blood
19 chr3:98527200-98542200 Weak transcription H9 Cell Line embryonic stem cell
20 chr3:98527200-98545200 Weak transcription Skeletal Muscle Female skeletal muscle
21 chr3:98527200-98545600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
22 chr3:98528200-98575400 Weak transcription Duodenum Smooth Muscle Duodenum
23 chr3:98528400-98542200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
24 chr3:98528600-98543600 Strong transcription NHEK skin
25 chr3:98528600-98562000 Weak transcription Rectal Smooth Muscle rectum
26 chr3:98529000-98540000 Weak transcription Brain Hippocampus Middle brain
27 chr3:98529200-98538200 Weak transcription Rectal Mucosa Donor 29 rectum
28 chr3:98529400-98539000 Weak transcription Brain Cingulate Gyrus brain
29 chr3:98529400-98546200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
30 chr3:98530400-98537400 Weak transcription Primary hematopoietic stem cells short term culture blood
31 chr3:98530400-98542000 Weak transcription Primary hematopoietic stem cells blood
32 chr3:98530800-98542600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
33 chr3:98532400-98541200 Strong transcription Breast Myoepithelial Primary Cells Breast
34 chr3:98532400-98546200 Weak transcription Esophagus oesophagus
35 chr3:98532600-98537400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
36 chr3:98532800-98541800 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
37 chr3:98533200-98538600 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
38 chr3:98533600-98537400 Genic enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
39 chr3:98534000-98545000 Weak transcription Ovary ovary
40 chr3:98534000-98552400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
41 chr3:98534200-98537200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
42 chr3:98534200-98537400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
43 chr3:98534200-98537600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
44 chr3:98534200-98538000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
45 chr3:98534200-98539800 Weak transcription ES-I3 Cell Line embryonic stem cell
46 chr3:98534200-98542800 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
47 chr3:98534200-98552200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
48 chr3:98534400-98537000 Weak transcription Fetal Brain Female brain
49 chr3:98534400-98545600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
50 chr3:98534600-98537200 Strong transcription NHDF-Ad bronchial

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Last update: Aug 31, 2015