Variant report

Variant	rs62280359
Chromosome Location	chr3:132952389-132952390
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10446319	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10446320	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10935052	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10935053	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10935055	0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs11706654	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs11708546	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11711460	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11712573	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11718689	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs11720441	0.81[ASN][1000 genomes]
rs11916334	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11920436	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11922161	0.83[AFR][1000 genomes]
rs12637903	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs13063196	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1355776	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs16840188	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1949220	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2122399	0.86[AFR][1000 genomes]
rs28883687	0.81[ASN][1000 genomes]
rs35753560	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs3849404	0.80[ASN][1000 genomes]
rs3849405	0.80[ASN][1000 genomes]
rs4254659	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4306857	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4459902	0.81[ASN][1000 genomes]
rs4600815	0.82[ASN][1000 genomes]
rs4854577	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4854705	0.83[AFR][1000 genomes]
rs4854707	0.82[AFR][1000 genomes]
rs4854713	0.81[ASN][1000 genomes]
rs55716424	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs55794041	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs55856984	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56940649	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs57116584	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs57420262	0.85[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs58238138	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58372281	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs60141688	0.83[AFR][1000 genomes]
rs60961447	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61458354	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs62278973	0.86[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs62278976	0.85[AFR][1000 genomes]
rs62279002	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs62280349	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62280351	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62280352	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62280355	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62282263	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6439389	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6766263	0.82[AFR][1000 genomes]
rs6774247	0.81[ASN][1000 genomes]
rs6803600	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6809033	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7617947	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7627254	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7632905	0.81[ASN][1000 genomes]
rs7641051	0.82[AFR][1000 genomes]
rs766952	0.82[AFR][1000 genomes]
rs769097	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530055	chr3:132380878-132982343	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:132947600-132952400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr3:132948200-132956400	Weak transcription	HSMM	muscle
3	chr3:132950000-132955000	Weak transcription	Fetal Lung	lung
4	chr3:132950800-132956000	Weak transcription	Fetal Brain Female	brain
5	chr3:132951400-132955200	Weak transcription	Fetal Brain Male	brain
6	chr3:132951600-132954400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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