Variant report

Variant	rs62281663
Chromosome Location	chr3:99936137-99936138
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1060452	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11719857	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs11918291	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11920015	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11923373	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11924911	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12486660	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12486865	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12490043	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12490140	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12492610	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12493917	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17335566	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17335614	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2171205	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs277657	0.82[EUR][1000 genomes]
rs4928116	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4928117	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4928161	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4928166	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4928170	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55950446	0.91[EUR][1000 genomes]
rs56181320	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56311459	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs57271189	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7619048	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817478	chr3:99474086-99955548	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv916476	chr3:99478229-100124625	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv1003924	chr3:99933762-100112690	Strong transcription Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99930600-99937400	Weak transcription	Psoas Muscle	Psoas
2	chr3:99931200-99938000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr3:99935000-99936400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr3:99935200-99936200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:99935200-99936200	Enhancers	HSMM	muscle
6	chr3:99936000-99936200	Enhancers	Muscle Satellite Cultured Cells	--
7	chr3:99936000-99936200	Enhancers	HSMMtube	muscle
8	chr3:99936000-99936200	Enhancers	NH-A	brain

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