Variant report

Variant	rs62282027
Chromosome Location	chr3:141344993-141344994
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs62282028	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282032	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6774127	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141332400-141345800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr3:141342600-141346000	Weak transcription	Fetal Intestine Small	intestine
3	chr3:141343800-141345000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:141344000-141345800	Enhancers	HMEC	breast
5	chr3:141344200-141345000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr3:141344200-141345000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr3:141344200-141345200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:141344200-141345800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:141344200-141345800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr3:141344200-141346600	Enhancers	Ovary	ovary
11	chr3:141344400-141345000	Enhancers	Fetal Intestine Large	intestine
12	chr3:141344400-141346000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr3:141344600-141345600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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