Variant report

Variant	rs62284742
Chromosome Location	chr3:155522874-155522875
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:155522507..155525053-chr3:155587874..155590161,2	MCF-7	breast:
2	chr3:155476567..155478417-chr3:155522248..155524245,2	MCF-7	breast:
3	chr3:155520264..155525290-chr3:155586627..155590296,8	K562	blood:
4	chr3:155522731..155527439-chr3:155568712..155573851,7	MCF-7	breast:
5	chr3:155520823..155524412-chr3:155585049..155590112,5	MCF-7	breast:
6	chr3:155521670..155525457-chr3:155569550..155572694,3	MCF-7	breast:
7	chr3:155522613..155525345-chr3:155572139..155575204,3	K562	blood:
8	chr3:155522036..155526613-chr3:155586597..155592084,8	K562	blood:

No data

Variant related genes	Relation type
ENSG00000241307	Chromatin interaction
ENSG00000169359	Chromatin interaction
ENSG00000163655	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12486921	0.99[ASN][1000 genomes]
rs358732	0.82[ASN][1000 genomes]
rs358739	0.88[EUR][1000 genomes]
rs358747	0.86[EUR][1000 genomes]
rs395667	0.91[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs404570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs427139	0.99[ASN][1000 genomes]
rs62284741	0.91[AFR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877680	chr3:155438022-155723064	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1014031	chr3:155481097-155524777	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv999641	chr3:155481097-155534616	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	esv2753744	chr3:155487298-155707298	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155487600-155524200	Weak transcription	Fetal Heart	heart
2	chr3:155488200-155523200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:155489000-155523200	Weak transcription	Thymus	Thymus
4	chr3:155491600-155523200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr3:155494400-155523600	Weak transcription	Small Intestine	intestine
6	chr3:155500400-155523200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:155506600-155523000	Weak transcription	Colon Smooth Muscle	Colon
8	chr3:155506800-155523200	Weak transcription	Fetal Kidney	kidney
9	chr3:155508800-155523200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr3:155509000-155523400	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr3:155509000-155523400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr3:155509200-155523200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr3:155509200-155523200	Weak transcription	Brain Germinal Matrix	brain
14	chr3:155509400-155523000	Weak transcription	A549	lung
15	chr3:155509400-155523200	Weak transcription	Fetal Muscle Trunk	muscle
16	chr3:155509600-155523200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr3:155509600-155523200	Weak transcription	Esophagus	oesophagus
18	chr3:155509600-155523400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr3:155509800-155523000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr3:155509800-155523000	Weak transcription	Pancreas	Pancrea
21	chr3:155509800-155523200	Weak transcription	Aorta	Aorta
22	chr3:155509800-155523200	Weak transcription	Right Ventricle	heart
23	chr3:155509800-155523400	Weak transcription	Fetal Lung	lung
24	chr3:155510000-155523000	Weak transcription	Adipose Nuclei	Adipose
25	chr3:155510000-155523000	Weak transcription	Brain Anterior Caudate	brain
26	chr3:155510000-155523000	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr3:155510000-155523000	Weak transcription	Lung	lung
28	chr3:155510000-155523000	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr3:155510000-155523000	Weak transcription	Stomach Smooth Muscle	stomach
30	chr3:155510000-155523200	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr3:155510000-155523200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr3:155510000-155523200	Weak transcription	Gastric	stomach
33	chr3:155510000-155523400	Weak transcription	Fetal Stomach	stomach
34	chr3:155510200-155523200	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr3:155510200-155523200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr3:155510200-155523200	Weak transcription	Left Ventricle	heart
37	chr3:155510400-155523200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr3:155510800-155523000	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr3:155511200-155523000	Weak transcription	Primary T cells from cord blood	blood
40	chr3:155512000-155523000	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr3:155512000-155523200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr3:155513200-155523000	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr3:155513400-155523000	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr3:155514800-155523000	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr3:155515000-155523000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr3:155515000-155523000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr3:155515000-155523200	Weak transcription	Fetal Brain Female	brain
48	chr3:155515000-155523400	Weak transcription	Fetal Muscle Leg	muscle
49	chr3:155515200-155523000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr3:155515200-155523000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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