Variant report

Variant	rs62285077
Chromosome Location	chr3:156244888-156244889
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:156244041..156246275-chr3:156247961..156249711,2	MCF-7	breast:
2	chr3:156201899..156204602-chr3:156243661..156246456,2	K562	blood:
3	chr3:156244452..156246713-chr3:156259081..156262039,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10513493	0.82[EUR][1000 genomes]
rs7431084	1.00[ASN][1000 genomes]
rs9820091	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv829764	chr3:156174824-156347774	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
3	nsv877683	chr3:156180366-156272351	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs62285077	KCNAB1	Cis_1M	lymphoblastoid	RTeQTL
rs62285077	SSR3	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156227600-156246000	Weak transcription	Brain Hippocampus Middle	brain
2	chr3:156230200-156251000	Weak transcription	Left Ventricle	heart
3	chr3:156232200-156249200	Weak transcription	Gastric	stomach
4	chr3:156233400-156246600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr3:156234400-156248600	Weak transcription	Brain Anterior Caudate	brain
6	chr3:156234400-156251200	Weak transcription	Ovary	ovary
7	chr3:156236000-156250200	Weak transcription	Rectal Smooth Muscle	rectum
8	chr3:156236200-156247600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr3:156236800-156251000	Weak transcription	Pancreas	Pancrea
10	chr3:156236800-156251200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr3:156237200-156250600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:156238200-156251400	Weak transcription	A549	lung
13	chr3:156240400-156260200	Weak transcription	Esophagus	oesophagus
14	chr3:156240600-156251800	Weak transcription	Fetal Muscle Leg	muscle
15	chr3:156240800-156245600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr3:156240800-156246200	Weak transcription	Brain Substantia Nigra	brain
17	chr3:156240800-156248000	Weak transcription	Brain Cingulate Gyrus	brain
18	chr3:156241400-156248200	Weak transcription	Brain Angular Gyrus	brain
19	chr3:156241600-156250800	Weak transcription	Stomach Smooth Muscle	stomach
20	chr3:156241600-156255800	Weak transcription	Duodenum Mucosa	Duodenum
21	chr3:156241800-156251000	Weak transcription	HSMMtube	muscle
22	chr3:156242000-156253000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr3:156242200-156251200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr3:156243000-156255200	Weak transcription	Dnd41	blood
25	chr3:156243200-156251000	Weak transcription	HSMM	muscle
26	chr3:156243200-156253800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr3:156243200-156255600	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr3:156243200-156255600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr3:156243200-156255800	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr3:156243200-156256600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr3:156243200-156256800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr3:156243200-156256800	Weak transcription	GM12878-XiMat	blood
33	chr3:156243200-156257000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr3:156243200-156257000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr3:156243200-156258800	Weak transcription	Primary B cells from peripheral blood	blood
36	chr3:156243400-156256600	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr3:156243400-156256800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr3:156243600-156246600	Strong transcription	Liver	Liver
39	chr3:156244000-156246200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr3:156244000-156249800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr3:156244000-156257000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr3:156244200-156250400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr3:156244400-156253000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr3:156244600-156246400	Weak transcription	Aorta	Aorta
45	chr3:156244600-156248600	Weak transcription	Adipose Nuclei	Adipose
46	chr3:156244600-156257000	Weak transcription	Lung	lung
47	chr3:156244800-156252200	Weak transcription	NHLF	lung

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