Variant report

Variant	rs62289851
Chromosome Location	chr4:15886392-15886393
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16892537	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16892545	0.89[ASN][1000 genomes]
rs16892551	0.89[ASN][1000 genomes]
rs2532081	1.00[ASN][1000 genomes]
rs2532082	1.00[ASN][1000 genomes]
rs2872498	0.95[ASN][1000 genomes]
rs62289853	1.00[ASN][1000 genomes]
rs62289854	1.00[ASN][1000 genomes]
rs62289855	1.00[ASN][1000 genomes]
rs6834712	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv916742	chr4:15797994-16064232	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv878714	chr4:15840839-15895791	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv878715	chr4:15840839-15947493	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15884400-15886400	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr4:15884400-15886400	Enhancers	Stomach Mucosa	stomach
3	chr4:15884800-15887200	Weak transcription	NHEK	skin
4	chr4:15885000-15890000	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr4:15885200-15888200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr4:15885600-15886400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr4:15885600-15886400	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr4:15885800-15886400	Enhancers	Colonic Mucosa	Colon
9	chr4:15885800-15886600	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr4:15886000-15886400	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr4:15886000-15886400	Enhancers	NH-A	brain
12	chr4:15886000-15886600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr4:15886200-15886800	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr4:15886200-15887400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr4:15886200-15892800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr4:15886200-15892800	Weak transcription	A549	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links