Variant report

Variant	rs62292291
Chromosome Location	chr3:179946963-179946964
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10513771	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10937022	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12487650	0.85[ASN][1000 genomes]
rs12492526	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12497420	0.85[ASN][1000 genomes]
rs12633042	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12638766	0.95[EUR][1000 genomes]
rs13322790	0.96[ASN][1000 genomes]
rs1357904	0.96[ASN][1000 genomes]
rs1464845	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1525276	0.96[ASN][1000 genomes]
rs1568859	0.84[ASN][1000 genomes]
rs1568860	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1589858	0.92[ASN][1000 genomes]
rs1608796	0.98[EUR][1000 genomes]
rs16831219	0.88[ASN][1000 genomes]
rs16831259	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16831288	0.90[ASN][1000 genomes]
rs2030763	0.84[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs2091273	0.92[ASN][1000 genomes]
rs2177723	0.83[ASN][1000 genomes]
rs2178582	0.94[EUR][1000 genomes]
rs2222858	0.96[EUR][1000 genomes]
rs2339967	0.85[ASN][1000 genomes]
rs2339968	0.85[ASN][1000 genomes]
rs2878954	0.82[ASN][1000 genomes]
rs2879654	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs28865282	0.83[ASN][1000 genomes]
rs3906013	0.90[ASN][1000 genomes]
rs3906014	0.89[ASN][1000 genomes]
rs3914867	0.81[ASN][1000 genomes]
rs3914868	0.81[ASN][1000 genomes]
rs4241377	0.83[ASN][1000 genomes]
rs4343625	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4854902	0.85[ASN][1000 genomes]
rs4854903	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4854961	0.83[ASN][1000 genomes]
rs4854962	0.83[ASN][1000 genomes]
rs4854964	0.96[ASN][1000 genomes]
rs4854966	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56234136	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62292283	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62292284	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62292286	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62292288	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62292290	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62292292	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62292294	0.97[EUR][1000 genomes]
rs6790229	0.86[ASN][1000 genomes]
rs7622125	0.90[ASN][1000 genomes]
rs7639931	0.83[ASN][1000 genomes]
rs7643438	0.85[ASN][1000 genomes]
rs7652322	0.96[ASN][1000 genomes]
rs7652473	0.87[ASN][1000 genomes]
rs9290696	0.85[ASN][1000 genomes]
rs9819178	0.90[ASN][1000 genomes]
rs9837718	0.88[ASN][1000 genomes]
rs9840477	0.91[ASN][1000 genomes]
rs9840775	0.91[ASN][1000 genomes]
rs9860526	0.91[ASN][1000 genomes]
rs9869517	0.95[ASN][1000 genomes]
rs9869873	0.83[ASN][1000 genomes]
rs9871936	0.92[ASN][1000 genomes]
rs9880357	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012271	chr3:179806875-180234871	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv878040	chr3:179823887-180128288	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv997388	chr3:179899279-180172349	Enhancers Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv536817	chr3:179899279-180172349	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179946600-179947400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr3:179946600-179949000	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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