Variant report

Variant	rs62299371
Chromosome Location	chr4:55085066-55085067
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs41279525	1.00[AFR][1000 genomes]
rs62299372	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008793	chr4:55060925-55535807	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv537098	chr4:55060925-55535807	Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55084200-55085200	Bivalent Enhancer	Stomach Mucosa	stomach
2	chr4:55084200-55091200	Weak transcription	Ovary	ovary
3	chr4:55084400-55085200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr4:55084600-55085200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr4:55084600-55085600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr4:55084600-55090600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr4:55084600-55091400	Weak transcription	Osteobl	bone
8	chr4:55084600-55092800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr4:55084800-55086200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr4:55084800-55090600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr4:55084800-55091400	Weak transcription	NHLF	lung
12	chr4:55085000-55085200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr4:55085000-55085200	Bivalent/Poised TSS	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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