Variant report

Variant	rs62303603
Chromosome Location	chr4:82392110-82392111
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11736910	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11939325	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17005148	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17558376	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62302360	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62302366	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62303632	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv829986	chr4:82345163-82509860	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:82389800-82393800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:82390200-82392600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr4:82390400-82393600	Active TSS	Lung	lung
4	chr4:82390600-82393400	Active TSS	Liver	Liver
5	chr4:82390600-82393400	Active TSS	Duodenum Mucosa	Duodenum
6	chr4:82390600-82393600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr4:82390600-82393600	Active TSS	Esophagus	oesophagus
8	chr4:82390600-82394200	Active TSS	Duodenum Smooth Muscle	Duodenum
9	chr4:82390800-82392800	Flanking Active TSS	Primary hematopoietic stem cells	blood
10	chr4:82391000-82392200	Active TSS	Stomach Smooth Muscle	stomach
11	chr4:82391000-82392400	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr4:82391000-82392600	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr4:82391000-82392600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
14	chr4:82391000-82392600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr4:82391000-82392600	Flanking Active TSS	Adipose Nuclei	Adipose
16	chr4:82391000-82393600	Active TSS	Aorta	Aorta
17	chr4:82391000-82393600	Active TSS	Brain Inferior Temporal Lobe	brain
18	chr4:82391000-82393600	Active TSS	Stomach Mucosa	stomach
19	chr4:82391000-82393800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
20	chr4:82391000-82393800	Active TSS	Colonic Mucosa	Colon
21	chr4:82391000-82393800	Active TSS	Right Ventricle	heart
22	chr4:82391200-82392400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
23	chr4:82391200-82392400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
24	chr4:82391200-82392600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
25	chr4:82391200-82392600	Flanking Active TSS	Fetal Stomach	stomach
26	chr4:82391200-82393400	Active TSS	Brain Substantia Nigra	brain
27	chr4:82391200-82393400	Active TSS	Placenta	Placenta
28	chr4:82391200-82393600	Active TSS	Brain Angular Gyrus	brain
29	chr4:82391200-82393600	Active TSS	Brain Hippocampus Middle	brain
30	chr4:82391200-82393600	Active TSS	Pancreatic Islets	Pancreatic Islet
31	chr4:82391200-82393800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
32	chr4:82391400-82392200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
33	chr4:82391400-82392200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr4:82391400-82392200	Flanking Active TSS	Fetal Thymus	thymus
35	chr4:82391400-82392200	Bivalent Enhancer	K562	blood
36	chr4:82391400-82392400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr4:82391400-82392400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr4:82391400-82392400	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
39	chr4:82391400-82392400	Flanking Active TSS	Pancreas	Pancrea
40	chr4:82391400-82392400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
41	chr4:82391400-82392600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
42	chr4:82391400-82392600	Active TSS	Fetal Heart	heart
43	chr4:82391400-82392600	Flanking Active TSS	Fetal Muscle Leg	muscle
44	chr4:82391400-82392600	Flanking Active TSS	NHEK	skin
45	chr4:82391400-82393400	Active TSS	Primary T killer memory cells from peripheral blood	blood
46	chr4:82391400-82393400	Active TSS	Brain Cingulate Gyrus	brain
47	chr4:82391400-82393400	Active TSS	Spleen	Spleen
48	chr4:82391400-82393600	Active TSS	Left Ventricle	heart
49	chr4:82391400-82393600	Active TSS	Ovary	ovary
50	chr4:82391400-82393600	Active TSS	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links