Variant report

Variant	rs62304440
Chromosome Location	chr4:62804395-62804396
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1450896	0.92[EUR][1000 genomes]
rs62304413	1.00[AFR][1000 genomes]
rs62304444	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461377	chr4:62368762-62883431	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv594328	chr4:62368762-62883431	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv428760	chr4:62649399-62824542	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62786600-62822200	Weak transcription	Brain Angular Gyrus	brain
2	chr4:62789200-62821600	Weak transcription	Fetal Lung	lung
3	chr4:62789400-62813800	Weak transcription	Fetal Muscle Leg	muscle
4	chr4:62790200-62806200	Weak transcription	Aorta	Aorta
5	chr4:62799200-62805400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr4:62800000-62818600	Weak transcription	Brain Hippocampus Middle	brain
7	chr4:62800600-62805600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr4:62800600-62816200	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr4:62800800-62806800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr4:62800800-62815800	Weak transcription	Brain Substantia Nigra	brain
11	chr4:62802000-62816000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr4:62802000-62852000	Weak transcription	Fetal Muscle Trunk	muscle
13	chr4:62802800-62804600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr4:62803400-62804600	Strong transcription	Fetal Stomach	stomach
15	chr4:62804200-62804400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:62804200-62804400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr4:62804200-62804400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr4:62804200-62804400	Enhancers	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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