Variant report

Variant	rs62307564
Chromosome Location	chr4:101053271-101053272
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17620280	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17620626	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62306061	0.86[AMR][1000 genomes]
rs62306064	0.86[AMR][1000 genomes]
rs62306072	0.86[AMR][1000 genomes]
rs62306113	0.80[EUR][1000 genomes]
rs62306114	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62307570	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427689	chr4:100931741-101216531	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830019	chr4:101023666-101208908	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101052400-101053600	Enhancers	Rectal Smooth Muscle	rectum
2	chr4:101052400-101054600	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:101053200-101053600	Enhancers	Skeletal Muscle Female	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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