Variant report

Variant	rs62310184
Chromosome Location	chr4:93604399-93604400
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10516911	0.88[ASN][1000 genomes]
rs11725098	0.82[EUR][1000 genomes]
rs11734837	0.88[ASN][1000 genomes]
rs12640641	0.82[EUR][1000 genomes]
rs12641522	0.82[EUR][1000 genomes]
rs12642232	0.82[EUR][1000 genomes]
rs12643408	0.82[EUR][1000 genomes]
rs12644834	0.82[EUR][1000 genomes]
rs12644879	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12645188	0.88[ASN][1000 genomes]
rs12646095	0.82[EUR][1000 genomes]
rs12646114	0.82[EUR][1000 genomes]
rs12646162	0.82[EUR][1000 genomes]
rs12647704	0.82[EUR][1000 genomes]
rs12648061	0.82[EUR][1000 genomes]
rs12649323	0.82[EUR][1000 genomes]
rs16996358	0.90[ASN][1000 genomes]
rs17019756	0.90[ASN][1000 genomes]
rs17019760	0.88[ASN][1000 genomes]
rs17019782	0.84[ASN][1000 genomes]
rs17019784	0.85[ASN][1000 genomes]
rs17019786	0.88[ASN][1000 genomes]
rs17019792	0.88[ASN][1000 genomes]
rs17019800	0.90[ASN][1000 genomes]
rs2169946	0.88[ASN][1000 genomes]
rs2658	0.88[ASN][1000 genomes]
rs28562620	0.88[ASN][1000 genomes]
rs55707114	0.88[ASN][1000 genomes]
rs56278860	0.86[ASN][1000 genomes]
rs56405668	0.90[ASN][1000 genomes]
rs62309196	0.82[EUR][1000 genomes]
rs62309197	0.80[EUR][1000 genomes]
rs62309198	0.82[EUR][1000 genomes]
rs62309201	0.82[EUR][1000 genomes]
rs62309202	0.82[EUR][1000 genomes]
rs62309204	0.82[EUR][1000 genomes]
rs62309205	0.82[EUR][1000 genomes]
rs62309206	0.82[EUR][1000 genomes]
rs62309207	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62309208	0.82[EUR][1000 genomes]
rs62309209	0.82[EUR][1000 genomes]
rs62309210	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62309211	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62309212	0.80[EUR][1000 genomes]
rs62309213	0.80[EUR][1000 genomes]
rs62309215	0.82[EUR][1000 genomes]
rs62309220	0.82[EUR][1000 genomes]
rs62309221	0.82[EUR][1000 genomes]
rs62309222	0.82[EUR][1000 genomes]
rs62309223	0.82[EUR][1000 genomes]
rs62309224	0.82[EUR][1000 genomes]
rs62309225	0.82[EUR][1000 genomes]
rs62309227	0.82[EUR][1000 genomes]
rs62309228	0.82[EUR][1000 genomes]
rs62309229	0.82[EUR][1000 genomes]
rs62309230	0.82[EUR][1000 genomes]
rs62309231	0.82[EUR][1000 genomes]
rs62309232	0.82[EUR][1000 genomes]
rs62309233	0.82[EUR][1000 genomes]
rs62309234	0.82[EUR][1000 genomes]
rs62309235	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62310170	0.82[EUR][1000 genomes]
rs62310171	0.82[EUR][1000 genomes]
rs62310172	0.82[EUR][1000 genomes]
rs62310173	0.82[EUR][1000 genomes]
rs62310175	0.82[EUR][1000 genomes]
rs62310176	0.82[EUR][1000 genomes]
rs62310177	0.82[EUR][1000 genomes]
rs62310179	0.82[EUR][1000 genomes]
rs62310180	0.82[EUR][1000 genomes]
rs62310181	0.80[EUR][1000 genomes]
rs62310182	0.82[EUR][1000 genomes]
rs62310183	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62310187	0.90[ASN][1000 genomes]
rs62310188	0.90[ASN][1000 genomes]
rs62310190	0.88[ASN][1000 genomes]
rs62310191	0.88[ASN][1000 genomes]
rs62310192	0.88[ASN][1000 genomes]
rs6532380	0.82[EUR][1000 genomes]
rs6824925	0.82[EUR][1000 genomes]
rs6847540	0.82[EUR][1000 genomes]
rs6847922	0.82[EUR][1000 genomes]
rs6853303	0.82[EUR][1000 genomes]
rs6853672	0.80[EUR][1000 genomes]
rs6853981	0.82[EUR][1000 genomes]
rs72663510	0.90[ASN][1000 genomes]
rs9998380	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948712	chr4:93007985-93740409	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv879605	chr4:93376231-93740409	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1014431	chr4:93464326-93618241	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv537185	chr4:93464326-93618241	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv879608	chr4:93480717-93612903	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv830008	chr4:93510957-93685935	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv879610	chr4:93542768-93646501	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv999973	chr4:93553282-93622621	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv2763843	chr4:93553294-93728747	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv1008889	chr4:93555552-93622621	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv1014347	chr4:93555552-93637367	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv1003350	chr4:93566813-93821353	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv1013341	chr4:93588723-93693087	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:93599200-93624000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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