Variant report

Variant	rs62311124
Chromosome Location	chr4:91775095-91775096
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs17017712	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17017713	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17017714	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17017719	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17247845	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17248109	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17248648	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28595440	0.82[ASN][1000 genomes]
rs62311062	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62311065	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62311066	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62311068	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62311069	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62311070	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62311071	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62311072	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62311074	0.86[AMR][1000 genomes]
rs62311075	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62311076	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62311109	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62311110	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62311111	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62311112	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62311114	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62311118	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62311119	0.90[EUR][1000 genomes]
rs62311125	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72663648	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72663649	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72663663	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72879465	0.84[AFR][1000 genomes]
rs7670956	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534470	chr4:91342219-91842807	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv879553	chr4:91691313-91868576	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv879555	chr4:91743538-91967602	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv4422	chr4:91744177-91789188	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv491945	chr4:91753638-92240582	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91773800-91776000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:91773800-91776000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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