Variant report

Variant	rs62314285
Chromosome Location	chr4:74564210-74564211
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:74563007..74566093-chr4:74566214..74569321,4	K562	blood:
2	chr4:74563931..74567096-chr4:74570167..74572895,3	K562	blood:
3	chr4:74558088..74561478-chr4:74562636..74566265,4	K562	blood:
4	chr4:74559978..74562265-chr4:74562768..74565190,2	K562	blood:
5	chr4:74562881..74566093-chr4:74566845..74569555,4	K562	blood:
6	chr4:74563928..74566862-chr4:75033357..75036869,3	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs55704092	1.00[AFR][1000 genomes]
rs62314284	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72650824	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001725	chr4:74354050-74860924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv530126	chr4:74376622-74843892	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1008104	chr4:74468434-74621952	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv1012198	chr4:74487793-74621952	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv537139	chr4:74487793-74621952	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv1005231	chr4:74555497-74680079	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74558600-74567200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:74563400-74564800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:74563600-74564400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr4:74563600-74564800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr4:74563600-74564800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr4:74563600-74564800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr4:74563600-74564800	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr4:74563600-74564800	Enhancers	HMEC	breast
9	chr4:74563600-74564800	Enhancers	NHEK	skin
10	chr4:74563600-74565000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr4:74563600-74565000	Enhancers	HUVEC	blood vessel
12	chr4:74563800-74564400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr4:74563800-74564400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr4:74563800-74564400	Enhancers	HSMM	muscle
15	chr4:74563800-74564600	Enhancers	Pancreatic Islets	Pancreatic Islet
16	chr4:74563800-74564600	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr4:74563800-74564600	Enhancers	Osteobl	bone
18	chr4:74563800-74564800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr4:74563800-74564800	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr4:74563800-74564800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr4:74563800-74564800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr4:74563800-74564800	Enhancers	Hela-S3	cervix
23	chr4:74563800-74564800	Enhancers	NH-A	brain
24	chr4:74563800-74565000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr4:74564000-74564400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr4:74564000-74564600	Enhancers	Thymus	Thymus
27	chr4:74564000-74566800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr4:74564000-74570200	Enhancers	Primary neutrophils fromperipheralblood	blood
29	chr4:74564200-74566800	Weak transcription	NHDF-Ad	bronchial
30	chr4:74564200-74568400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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