Variant report

Variant	rs62318585
Chromosome Location	chr2:191961476-191961477
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10010088	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10213173	0.90[EUR][1000 genomes]
rs10461174	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11727151	0.84[ASN][1000 genomes]
rs13138388	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13148080	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17546687	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28539191	0.88[ASN][1000 genomes]
rs28833816	0.84[ASN][1000 genomes]
rs34159897	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3911415	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4106941	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9654143	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834493	chr2:191811373-191974240	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv998232	chr2:191841497-192020361	Genic enhancers Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191944000-191973000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr2:191951200-191977800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr2:191954800-191977000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr2:191958600-191966800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr2:191958600-191969400	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr2:191958600-191977600	Weak transcription	Primary T cells from cord blood	blood
7	chr2:191959000-191968200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr2:191959200-191968000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr2:191959400-191964400	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr2:191959400-191965000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr2:191959400-191969400	Weak transcription	Primary T helper cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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