Variant report

Variant	rs62319982
Chromosome Location	chr4:124953134-124953135
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:124946328..124947831-chr4:124951765..124954577,2	K562	blood:
2	chr4:124946011..124949360-chr4:124952812..124956213,3	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1028193	0.93[EUR][1000 genomes]
rs1028198	0.95[EUR][1000 genomes]
rs11098726	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1519237	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs17007658	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs17007710	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17007719	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17007781	0.93[EUR][1000 genomes]
rs62319981	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62319983	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62319984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62319990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62319991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62319992	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62319994	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62319999	0.95[EUR][1000 genomes]
rs62320014	0.95[EUR][1000 genomes]
rs72672834	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs72672836	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs72672839	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs72672862	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs72672863	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs72672865	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs72672866	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72672868	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs72672870	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs72672871	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs72672876	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs72672878	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs72672885	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9790839	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34581	chr4:124271321-125247395	Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv830049	chr4:124793932-124955708	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv868977	chr4:124841128-125550637	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv879879	chr4:124893772-124971109	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:124947200-124953800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr4:124949800-124953200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:124951800-124957800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:124951800-124961600	Weak transcription	Ovary	ovary
5	chr4:124952200-124956400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr4:124952400-124953400	Weak transcription	Colon Smooth Muscle	Colon
7	chr4:124952400-124953800	Weak transcription	Fetal Lung	lung
8	chr4:124952600-124956400	Weak transcription	Fetal Stomach	stomach
9	chr4:124952800-124953200	Weak transcription	Rectal Smooth Muscle	rectum

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