Variant report

Variant	rs62321371
Chromosome Location	chr4:107066382-107066383
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:107057719..107060245-chr4:107065228..107066927,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs62320060	0.92[EUR][1000 genomes]
rs62320111	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62321368	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879701	chr4:107024776-107163128	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv4450	chr4:107037823-107082669	Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv508301	chr4:107049086-107092730	Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv437411	chr4:107052107-107074097	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv1799357	chr4:107058025-107099737	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv1801434	chr4:107058025-107099737	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv1800933	chr4:107058025-107118662	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv1802243	chr4:107058025-107118662	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv1802962	chr4:107058025-107118662	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv1803376	chr4:107058025-107118662	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv1848076	chr4:107058334-107118662	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	esv1851828	chr4:107059549-107118662	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv879702	chr4:107065718-107175191	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107035600-107083200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr4:107037600-107066400	Weak transcription	Fetal Kidney	kidney
3	chr4:107037800-107077400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:107038000-107112000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr4:107053600-107067600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr4:107053800-107070000	Weak transcription	Brain Hippocampus Middle	brain
7	chr4:107053800-107080000	Weak transcription	Right Ventricle	heart
8	chr4:107053800-107083400	Weak transcription	HSMM	muscle
9	chr4:107053800-107083800	Weak transcription	Left Ventricle	heart
10	chr4:107053800-107101600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr4:107054000-107066400	Weak transcription	Liver	Liver
12	chr4:107054000-107067000	Weak transcription	Fetal Lung	lung
13	chr4:107054000-107067000	Weak transcription	Fetal Muscle Leg	muscle
14	chr4:107054000-107067800	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr4:107054000-107070000	Weak transcription	Primary hematopoietic stem cells	blood
16	chr4:107054000-107070400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr4:107054000-107074400	Weak transcription	HepG2	liver
18	chr4:107054000-107076800	Weak transcription	Fetal Muscle Trunk	muscle
19	chr4:107054000-107077000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr4:107054000-107077000	Weak transcription	Fetal Intestine Large	intestine
21	chr4:107054000-107077400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr4:107054000-107077400	Weak transcription	Aorta	Aorta
23	chr4:107054000-107077400	Weak transcription	Fetal Stomach	stomach
24	chr4:107054000-107077400	Weak transcription	Lung	lung
25	chr4:107054000-107081600	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr4:107054000-107083200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr4:107054000-107083400	Weak transcription	Pancreas	Pancrea
28	chr4:107054000-107091000	Weak transcription	Stomach Smooth Muscle	stomach
29	chr4:107054000-107113600	Weak transcription	Brain Anterior Caudate	brain
30	chr4:107054200-107070000	Weak transcription	Adipose Nuclei	Adipose
31	chr4:107054200-107083400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr4:107054600-107074400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr4:107056000-107066600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr4:107056000-107067200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr4:107056000-107067200	Weak transcription	Primary T cells from cord blood	blood
36	chr4:107056200-107067200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr4:107056200-107077000	Weak transcription	Ovary	ovary
38	chr4:107056200-107083400	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr4:107057800-107069800	Weak transcription	Primary B cells from cord blood	blood
40	chr4:107062200-107071200	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr4:107063000-107070000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr4:107063600-107067600	Weak transcription	Fetal Brain Male	brain
43	chr4:107064200-107070400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr4:107064400-107069600	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr4:107065000-107083400	Weak transcription	Brain Germinal Matrix	brain
46	chr4:107065800-107066600	Weak transcription	Primary B cells from peripheral blood	blood
47	chr4:107065800-107067600	Weak transcription	Psoas Muscle	Psoas

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