Variant report

Variant	rs62323189
Chromosome Location	chr4:99795463-99795464
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ADH5-6	chr4:99792836-99795886	NONHSAT097499

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1154412	1.00[ASN][1000 genomes]
rs11722494	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11727079	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11727086	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11731092	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11735758	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11736580	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13107184	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13107892	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13110878	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13115072	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13115688	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13124855	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13127259	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13130454	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13133934	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13832	1.00[ASN][1000 genomes]
rs17511498	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17570252	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17583053	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1992569	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2004994	1.00[ASN][1000 genomes]
rs2230574	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3018048	1.00[ASN][1000 genomes]
rs34116542	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34164768	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34445885	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34552530	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34849916	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35019647	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35360485	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35619083	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35885444	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36061550	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699369	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699689	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699692	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62323190	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62323206	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67650226	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6834230	0.89[AFR][1000 genomes]
rs72692635	1.00[ASN][1000 genomes]
rs72893526	0.91[AFR][1000 genomes]
rs72893533	0.91[AFR][1000 genomes]
rs72893538	0.87[AFR][1000 genomes]
rs72893541	0.89[AFR][1000 genomes]
rs72893544	0.91[AFR][1000 genomes]
rs72893547	0.91[AFR][1000 genomes]
rs72905036	0.87[AFR][1000 genomes]
rs72905048	0.89[AFR][1000 genomes]
rs72905053	0.86[AFR][1000 genomes]
rs72905075	0.89[AFR][1000 genomes]
rs7688221	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7688461	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7693840	0.91[AFR][1000 genomes]
rs896992	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009017	chr4:99669441-100406394	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv879654	chr4:99748988-99877402	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv879655	chr4:99783733-99843113	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99785400-99798800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr4:99790800-99805400	Weak transcription	Fetal Lung	lung
3	chr4:99791200-99798800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr4:99792400-99825000	Weak transcription	Gastric	stomach
5	chr4:99792600-99804000	Weak transcription	HUVEC	blood vessel
6	chr4:99792800-99797600	Weak transcription	HSMM	muscle
7	chr4:99792800-99799000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr4:99793000-99800800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr4:99793400-99803000	Weak transcription	Stomach Mucosa	stomach
10	chr4:99794200-99797600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr4:99794400-99798800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr4:99794400-99802600	Weak transcription	NHLF	lung
13	chr4:99794600-99797400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr4:99794600-99797600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr4:99794600-99797600	Weak transcription	NH-A	brain
16	chr4:99794600-99799800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr4:99794600-99800600	Weak transcription	HMEC	breast
18	chr4:99794600-99800600	Weak transcription	NHDF-Ad	bronchial
19	chr4:99794600-99802000	Weak transcription	Osteobl	bone
20	chr4:99794600-99802200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr4:99794600-99802800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr4:99794600-99802800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr4:99794600-99804800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr4:99794600-99805600	Weak transcription	Primary hematopoietic stem cells	blood
25	chr4:99794600-99805600	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr4:99794800-99797400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr4:99794800-99797400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr4:99794800-99798200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr4:99794800-99800800	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr4:99794800-99802600	Weak transcription	NHEK	skin
31	chr4:99795000-99800600	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr4:99795000-99807000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr4:99795400-99798400	Weak transcription	K562	blood

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