Variant report

Variant	rs62324290
Chromosome Location	chr4:54164405-54164406
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12512496	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57599232	1.00[AFR][1000 genomes]
rs62324285	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62324291	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62324294	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62324297	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62324336	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs62325035	0.89[EUR][1000 genomes]
rs62325039	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs62325042	0.85[EUR][1000 genomes]
rs62325049	0.92[EUR][1000 genomes]
rs62326404	0.92[EUR][1000 genomes]
rs6818457	0.91[EUR][1000 genomes]
rs6829104	0.92[EUR][1000 genomes]
rs7674799	0.89[EUR][1000 genomes]
rs7696930	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008593	chr4:54120297-54207769	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54140200-54179000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:54153200-54172200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr4:54161000-54172000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:54163400-54164600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr4:54164200-54165000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:54164200-54165000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr4:54164400-54177400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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