Variant report

Variant	rs62324487
Chromosome Location	chr4:125404883-125404884
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2390689	1.00[ASN][1000 genomes]
rs56358767	0.97[ASN][1000 genomes]
rs62320694	0.84[EUR][1000 genomes]
rs62323548	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62323550	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62323552	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62323553	0.97[ASN][1000 genomes]
rs62324484	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62324485	1.00[ASN][1000 genomes]
rs62324486	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868977	chr4:124841128-125550637	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv879880	chr4:125174817-125494547	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2760890	chr4:125273456-125466931	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv879881	chr4:125280852-125448288	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125403000-125406000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:125403600-125405400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr4:125403800-125405000	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr4:125403800-125405000	Enhancers	Fetal Heart	heart
5	chr4:125404000-125405000	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr4:125404000-125405000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr4:125404000-125405400	Enhancers	H1 Cell Line	embryonic stem cell
8	chr4:125404000-125405400	Enhancers	Brain Germinal Matrix	brain
9	chr4:125404000-125405600	Enhancers	Fetal Lung	lung
10	chr4:125404200-125405000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr4:125404200-125405800	Enhancers	Stomach Mucosa	stomach
12	chr4:125404400-125405000	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr4:125404600-125405200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr4:125404600-125405200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr4:125404800-125405000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:125404800-125410000	Weak transcription	Fetal Muscle Leg	muscle
17	chr4:125404800-125412600	Weak transcription	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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