Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs17082492	0.96[AFR][1000 genomes]
rs17082557	0.80[AFR][1000 genomes]
rs1962230	0.89[AFR][1000 genomes]
rs28494528	0.95[ASN][1000 genomes]
rs28496991	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28661921	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28704944	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28826682	0.81[AFR][1000 genomes]
rs28829603	0.81[AFR][1000 genomes]
rs28874576	0.81[AFR][1000 genomes]
rs28887768	0.95[AFR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35912570	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4555709	0.89[AFR][1000 genomes]
rs4555710	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55744909	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55926930	0.87[AFR][1000 genomes]
rs6824417	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6844551	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7680607	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9312637	0.89[AFR][1000 genomes]
rs9990883	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9992110	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs9997095	0.82[AFR][1000 genomes]
rs9998430	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004889	chr4:53436500-54106281	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv537094	chr4:53436500-54106281	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54004200-54052200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr4:54011600-54052200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr4:54036600-54052200	Weak transcription	HSMM	muscle
4	chr4:54038800-54054800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:54039800-54052200	Weak transcription	HSMMtube	muscle
6	chr4:54040000-54052200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr4:54040000-54052200	Weak transcription	NHDF-Ad	bronchial
8	chr4:54040600-54052000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:54043200-54050000	Weak transcription	Primary B cells from cord blood	blood
10	chr4:54043200-54077000	Weak transcription	Primary T cells from cord blood	blood
11	chr4:54043800-54044600	ZNF genes & repeats	Fetal Intestine Small	intestine
12	chr4:54044200-54044400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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