Variant report

Variant	rs62325352
Chromosome Location	chr4:111010737-111010738
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:111008440..111011561-chr4:111115460..111119101,3	K562	blood:
2	chr4:111010061..111013884-chr4:111117601..111121321,3	K562	blood:

Variant related genes	Relation type
ENSG00000170522	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11723239	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11726328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11726743	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11726880	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11726901	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11731035	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17041360	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34415611	0.88[AFR][1000 genomes]
rs56211927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56217731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56338714	0.88[AFR][1000 genomes]
rs56396763	0.88[AFR][1000 genomes]
rs57076108	0.96[EUR][1000 genomes]
rs72679203	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869392	chr4:110945459-111235071	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110993200-111015400	Weak transcription	Psoas Muscle	Psoas
2	chr4:110995000-111018600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:111004600-111026000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:111004600-111027800	Weak transcription	Esophagus	oesophagus
5	chr4:111006000-111011400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr4:111006000-111013200	Enhancers	Dnd41	blood
7	chr4:111006000-111014000	Enhancers	HMEC	breast
8	chr4:111006200-111012200	Enhancers	NHEK	skin
9	chr4:111006200-111012400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr4:111006200-111012400	Enhancers	Osteobl	bone
11	chr4:111006200-111012600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr4:111006400-111013000	Weak transcription	Fetal Kidney	kidney
13	chr4:111006600-111012200	Enhancers	NHDF-Ad	bronchial
14	chr4:111006600-111026000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr4:111006800-111012600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr4:111006800-111014200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr4:111006800-111025800	Weak transcription	Liver	Liver
18	chr4:111007000-111011600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr4:111007800-111011000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr4:111008000-111011000	Enhancers	HSMMtube	muscle
21	chr4:111008200-111010800	Enhancers	HSMM	muscle
22	chr4:111008400-111011000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr4:111008400-111011200	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr4:111008400-111012200	Weak transcription	Stomach Mucosa	stomach
25	chr4:111008400-111026000	Weak transcription	Fetal Brain Female	brain
26	chr4:111008600-111011600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr4:111009000-111011400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
28	chr4:111009000-111011400	Weak transcription	Hela-S3	cervix
29	chr4:111009000-111011800	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr4:111009200-111011000	Enhancers	H1 Cell Line	embryonic stem cell
31	chr4:111009200-111011000	Enhancers	Primary hematopoietic stem cells	blood
32	chr4:111009200-111011000	Enhancers	Fetal Thymus	thymus
33	chr4:111009200-111011400	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr4:111009200-111011800	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr4:111009200-111011800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
36	chr4:111009200-111012400	Weak transcription	Duodenum Mucosa	Duodenum
37	chr4:111009400-111011400	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr4:111009400-111012200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr4:111009400-111013600	Weak transcription	Brain Anterior Caudate	brain
40	chr4:111009600-111010800	Enhancers	iPS-15b Cell Line	embryonic stem cell
41	chr4:111009600-111011000	Enhancers	Primary T helper cells PMA-I stimulated	--
42	chr4:111009600-111011000	Enhancers	GM12878-XiMat	blood
43	chr4:111009600-111011400	Enhancers	HUES48 Cell Line	embryonic stem cell
44	chr4:111009600-111011400	Weak transcription	Ovary	ovary
45	chr4:111009600-111012000	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr4:111009600-111012200	Weak transcription	Fetal Intestine Small	intestine
47	chr4:111009600-111012400	Weak transcription	Brain Cingulate Gyrus	brain
48	chr4:111009600-111013200	Weak transcription	Brain Substantia Nigra	brain
49	chr4:111009800-111010800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr4:111009800-111010800	Enhancers	Primary hematopoietic stem cells short term culture	blood

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