Variant report

Variant	rs62325696
Chromosome Location	chr4:141845744-141845745
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs62325698	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62325705	0.92[EUR][1000 genomes]
rs62345038	0.93[ASN][1000 genomes]
rs7691812	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880167	chr4:141616979-142092124	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv830090	chr4:141770494-141947764	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830091	chr4:141796603-141980546	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv880168	chr4:141826780-141900370	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:141816200-141851400	Weak transcription	Brain Anterior Caudate	brain
2	chr4:141823200-141855800	Weak transcription	Osteobl	bone
3	chr4:141825800-141847200	Weak transcription	Fetal Kidney	kidney
4	chr4:141830200-141847600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr4:141832200-141845800	Weak transcription	Ovary	ovary
6	chr4:141832200-141846200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr4:141832200-141855200	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr4:141832400-141846000	Weak transcription	Adipose Nuclei	Adipose
9	chr4:141832400-141846400	Weak transcription	Right Ventricle	heart
10	chr4:141832600-141846200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr4:141832600-141847800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr4:141833800-141846000	Weak transcription	Spleen	Spleen
13	chr4:141834000-141846200	Weak transcription	Colon Smooth Muscle	Colon
14	chr4:141834000-141846200	Weak transcription	Fetal Stomach	stomach
15	chr4:141837000-141846000	Weak transcription	Fetal Muscle Leg	muscle
16	chr4:141837000-141846200	Weak transcription	Fetal Muscle Trunk	muscle
17	chr4:141842800-141852200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr4:141843200-141853400	Weak transcription	Fetal Brain Female	brain
19	chr4:141845600-141846400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr4:141845600-141847000	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr4:141845600-141848000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr4:141845600-141848400	Enhancers	Fetal Heart	heart
23	chr4:141845600-141850000	Weak transcription	Muscle Satellite Cultured Cells	--

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