Variant report

Variant	rs62326057
Chromosome Location	chr4:110549450-110549451
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1008327	0.90[ASN][1000 genomes]
rs11728573	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11734973	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12510716	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13128388	0.90[ASN][1000 genomes]
rs13846	0.81[ASN][1000 genomes]
rs149800	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1543812	0.83[ASN][1000 genomes]
rs17440077	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs197207	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs197209	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs197213	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs197218	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs197219	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs197220	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2158204	0.83[ASN][1000 genomes]
rs2346835	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs28515508	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4698770	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs62326054	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62326058	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62327660	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6533442	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6533446	0.83[ASN][1000 genomes]
rs6824270	0.83[ASN][1000 genomes]
rs6824542	0.81[ASN][1000 genomes]
rs6858416	0.85[ASN][1000 genomes]
rs72674829	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7658262	0.85[ASN][1000 genomes]
rs7690921	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv3349784	chr4:110348873-110723163	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	esv3419480	chr4:110521397-110549622	Genic enhancers Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110531000-110550600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr4:110531600-110549600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr4:110533000-110573000	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr4:110533400-110552800	Weak transcription	Primary B cells from cord blood	blood
5	chr4:110536000-110552800	Weak transcription	Primary B cells from peripheral blood	blood
6	chr4:110536400-110552800	Weak transcription	Adipose Nuclei	Adipose
7	chr4:110536400-110552800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr4:110538400-110552000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr4:110539400-110550800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr4:110544200-110552800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr4:110544200-110552800	Weak transcription	Ovary	ovary
12	chr4:110545200-110552800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr4:110545400-110552800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr4:110546000-110559600	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr4:110546200-110550800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr4:110546200-110550800	Weak transcription	Esophagus	oesophagus
17	chr4:110546200-110550800	Weak transcription	Placenta	Placenta
18	chr4:110546200-110551000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr4:110546200-110552000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr4:110546200-110552600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr4:110546200-110552600	Weak transcription	Fetal Intestine Large	intestine
22	chr4:110546200-110552800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr4:110546200-110552800	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr4:110546200-110552800	Weak transcription	Small Intestine	intestine
25	chr4:110546200-110566400	Weak transcription	Fetal Thymus	thymus
26	chr4:110546400-110550600	Enhancers	Primary T helper cells fromperipheralblood	blood
27	chr4:110546400-110552800	Weak transcription	Right Atrium	heart
28	chr4:110546600-110580600	Weak transcription	Thymus	Thymus
29	chr4:110546800-110549600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr4:110548000-110554200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
31	chr4:110548200-110549800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr4:110548400-110549600	Enhancers	Fetal Intestine Small	intestine
33	chr4:110548400-110553600	Enhancers	Primary T helper cells PMA-I stimulated	--
34	chr4:110548600-110553800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
35	chr4:110548800-110550200	Enhancers	Primary T cells fromperipheralblood	blood
36	chr4:110549000-110550200	Enhancers	Primary T helper naive cells from peripheral blood	blood
37	chr4:110549000-110550800	Enhancers	Primary T cells from cord blood	blood
38	chr4:110549200-110549800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr4:110549200-110550000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
40	chr4:110549200-110551200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
41	chr4:110549400-110550800	Enhancers	Primary hematopoietic stem cells	blood
42	chr4:110549400-110551200	Enhancers	Primary T killer memory cells from peripheral blood	blood

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