Variant report

Variant	rs62326560
Chromosome Location	chr4:111040959-111040960
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:111039067..111041726-chr4:111116886..111119654,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170522	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1125819	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11723007	0.85[ASN][1000 genomes]
rs4698811	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62326561	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62326563	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72617756	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869392	chr4:110945459-111235071	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:111024200-111049800	Weak transcription	Fetal Stomach	stomach
2	chr4:111026000-111061000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr4:111026400-111041200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:111026400-111046000	Weak transcription	Left Ventricle	heart
5	chr4:111026400-111049200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:111028000-111047600	Weak transcription	Gastric	stomach
7	chr4:111028600-111041200	Weak transcription	Small Intestine	intestine
8	chr4:111028600-111054000	Weak transcription	HepG2	liver
9	chr4:111029600-111054200	Weak transcription	Liver	Liver
10	chr4:111029800-111041000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr4:111029800-111041000	Weak transcription	HSMM	muscle
12	chr4:111030000-111060800	Weak transcription	A549	lung
13	chr4:111030000-111093800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr4:111030000-111098800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr4:111031200-111041000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr4:111031200-111043800	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr4:111031400-111041000	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr4:111031800-111066200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr4:111037600-111051400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr4:111038000-111051600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr4:111038200-111051600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr4:111038200-111056400	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr4:111038600-111041000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr4:111038600-111041000	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr4:111038600-111053000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr4:111038800-111043000	Weak transcription	K562	blood
27	chr4:111039800-111041400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr4:111039800-111041400	Enhancers	Fetal Intestine Large	intestine
29	chr4:111040000-111041000	Enhancers	Dnd41	blood
30	chr4:111040000-111041400	Enhancers	Duodenum Mucosa	Duodenum
31	chr4:111040000-111041800	Enhancers	Fetal Intestine Small	intestine
32	chr4:111040000-111042000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr4:111040000-111042200	Enhancers	Placenta	Placenta
34	chr4:111040200-111041400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr4:111040200-111041400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr4:111040200-111042000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr4:111040200-111042000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr4:111040200-111042000	Enhancers	Osteobl	bone
39	chr4:111040400-111041200	Enhancers	Fetal Heart	heart
40	chr4:111040400-111041400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
41	chr4:111040400-111041400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr4:111040400-111041600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr4:111040400-111042000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr4:111040400-111042400	Enhancers	HMEC	breast
45	chr4:111040400-111043800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr4:111040400-111066800	Weak transcription	Esophagus	oesophagus
47	chr4:111040600-111041000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
48	chr4:111040600-111041000	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr4:111040600-111041200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr4:111040600-111041200	Enhancers	Primary T helper cells PMA-I stimulated	--

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