Variant report

Variant	rs62327337
Chromosome Location	chr4:104092720-104092721
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1159713	0.83[AMR][1000 genomes]
rs62327332	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3429917	chr4:103915319-104207455	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv830021	chr4:103934454-104100588	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1015023	chr4:104039145-104565217	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv830022	chr4:104087199-104257784	Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:104021200-104100200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:104038200-104095800	Strong transcription	Fetal Thymus	thymus
3	chr4:104058200-104118400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr4:104065000-104113200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr4:104073600-104118400	Weak transcription	Fetal Kidney	kidney
6	chr4:104078400-104108400	Strong transcription	Dnd41	blood
7	chr4:104080000-104101800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr4:104088600-104109000	Strong transcription	HUES6 Cell Line	embryonic stem cell
9	chr4:104089800-104098800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr4:104089800-104114800	Weak transcription	Placenta	Placenta
11	chr4:104089800-104118200	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr4:104089800-104119000	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr4:104090000-104097600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr4:104090000-104098600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr4:104090000-104118000	Weak transcription	Fetal Stomach	stomach
16	chr4:104090000-104118600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr4:104090000-104119000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr4:104090200-104093600	Weak transcription	HUVEC	blood vessel
19	chr4:104090200-104095400	Weak transcription	HMEC	breast
20	chr4:104090200-104098400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr4:104090200-104098400	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr4:104090200-104098400	Weak transcription	Fetal Muscle Trunk	muscle
23	chr4:104090200-104098400	Weak transcription	Thymus	Thymus
24	chr4:104090200-104098400	Weak transcription	HepG2	liver
25	chr4:104090200-104098600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr4:104090200-104100000	Weak transcription	NHEK	skin
27	chr4:104090200-104100200	Weak transcription	NHLF	lung
28	chr4:104090200-104107400	Weak transcription	Primary B cells from cord blood	blood
29	chr4:104090200-104118200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr4:104090200-104118200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr4:104090200-104118200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr4:104090200-104118200	Weak transcription	Fetal Intestine Small	intestine
33	chr4:104090400-104094000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr4:104090400-104118200	Weak transcription	Fetal Brain Male	brain
35	chr4:104090600-104107000	Weak transcription	Hela-S3	cervix
36	chr4:104090600-104109600	Weak transcription	Primary T cells from cord blood	blood
37	chr4:104090600-104117600	Weak transcription	Fetal Heart	heart
38	chr4:104090800-104094400	Weak transcription	HSMM	muscle
39	chr4:104090800-104095200	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr4:104090800-104097000	Weak transcription	A549	lung
41	chr4:104090800-104097800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr4:104090800-104098000	Weak transcription	NH-A	brain
43	chr4:104090800-104098200	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr4:104090800-104098400	Weak transcription	Fetal Muscle Leg	muscle
45	chr4:104090800-104098600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr4:104090800-104098600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr4:104090800-104100400	Weak transcription	Brain Germinal Matrix	brain
48	chr4:104090800-104100400	Weak transcription	Fetal Lung	lung
49	chr4:104090800-104102400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr4:104090800-104118200	Weak transcription	Duodenum Mucosa	Duodenum

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