Variant report

Variant	rs62327870
Chromosome Location	chr4:142819457-142819458
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17464397	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17464951	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2322351	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28465591	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28540217	0.85[AMR][1000 genomes]
rs59068660	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62327868	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62327872	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62327878	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6846801	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6848036	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9684916	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9993798	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027004	chr4:142487721-143007320	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv830095	chr4:142695078-142884988	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142813000-142820000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr4:142814400-142819600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr4:142814600-142819600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr4:142814800-142819600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr4:142815000-142819600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr4:142818000-142819600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr4:142819200-142821000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr4:142819400-142819600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr4:142819400-142820000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr4:142819400-142820200	Enhancers	Primary hematopoietic stem cells	blood
11	chr4:142819400-142820200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr4:142819400-142820600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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