Variant report

Variant	rs62330292
Chromosome Location	chr4:144132537-144132538
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:144132280..144134329-chr4:144416200..144418882,2	K562	blood:
2	chr4:144131210..144134045-chr4:144135532..144137105,2	MCF-7	breast:
3	chr4:144127950..144129588-chr4:144131950..144133669,2	K562	blood:
4	chr4:144127950..144130410-chr4:144132169..144133963,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10155329	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10598	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62337489	0.83[AMR][1000 genomes]
rs62337513	0.83[AMR][1000 genomes]
rs62337514	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033902	chr4:144114413-144285772	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144107400-144137200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:144109200-144142800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr4:144109800-144138200	Strong transcription	Fetal Thymus	thymus
4	chr4:144110200-144136600	Strong transcription	Primary T cells fromperipheralblood	blood
5	chr4:144110200-144138000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr4:144110200-144145600	Weak transcription	Stomach Mucosa	stomach
7	chr4:144110800-144133000	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr4:144110800-144137400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:144111400-144137400	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr4:144111800-144136200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr4:144113000-144137400	Strong transcription	Dnd41	blood
12	chr4:144114600-144137400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr4:144114800-144136200	Strong transcription	Primary T helper cells fromperipheralblood	blood
14	chr4:144118400-144134800	Weak transcription	Gastric	stomach
15	chr4:144118400-144142600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr4:144118400-144142800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr4:144118400-144143000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr4:144118400-144150000	Weak transcription	Aorta	Aorta
19	chr4:144118800-144135600	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr4:144118800-144136400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr4:144119200-144136200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr4:144119400-144144400	Weak transcription	Hela-S3	cervix
23	chr4:144120400-144133400	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr4:144120600-144134800	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr4:144120600-144142800	Weak transcription	Spleen	Spleen
26	chr4:144120600-144147000	Weak transcription	Esophagus	oesophagus
27	chr4:144120800-144133400	Weak transcription	Brain Substantia Nigra	brain
28	chr4:144120800-144149400	Weak transcription	Pancreas	Pancrea
29	chr4:144121000-144139800	Weak transcription	Brain Angular Gyrus	brain
30	chr4:144122000-144132600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr4:144122000-144134800	Weak transcription	Psoas Muscle	Psoas
32	chr4:144122200-144134800	Weak transcription	Brain Cingulate Gyrus	brain
33	chr4:144122400-144133400	Weak transcription	Small Intestine	intestine
34	chr4:144122400-144145600	Weak transcription	Right Ventricle	heart
35	chr4:144122600-144132600	Weak transcription	Left Ventricle	heart
36	chr4:144122600-144134200	Weak transcription	Thymus	Thymus
37	chr4:144122600-144134800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr4:144122800-144144600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr4:144122800-144145800	Weak transcription	Colonic Mucosa	Colon
40	chr4:144124200-144136800	Strong transcription	GM12878-XiMat	blood
41	chr4:144124400-144137600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr4:144124600-144136000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
43	chr4:144124600-144137600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr4:144125800-144155600	Weak transcription	Fetal Stomach	stomach
45	chr4:144126000-144136200	Weak transcription	Rectal Smooth Muscle	rectum
46	chr4:144126000-144142800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr4:144126400-144135000	Weak transcription	Fetal Brain Male	brain
48	chr4:144126400-144135000	Weak transcription	Fetal Brain Female	brain
49	chr4:144126600-144134800	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr4:144126600-144134800	Weak transcription	Fetal Kidney	kidney

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