Variant report

Variant	rs62334982
Chromosome Location	chr4:186784210-186784211
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10020233	0.95[ASN][1000 genomes]
rs11132358	0.82[ASN][1000 genomes]
rs11722545	0.85[ASN][1000 genomes]
rs11723186	0.83[ASN][1000 genomes]
rs11725640	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11727209	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13114501	0.83[ASN][1000 genomes]
rs13120232	0.82[ASN][1000 genomes]
rs13122603	1.00[AFR][1000 genomes]
rs13138996	0.83[ASN][1000 genomes]
rs13139354	0.83[ASN][1000 genomes]
rs13144263	0.83[ASN][1000 genomes]
rs13144444	0.83[ASN][1000 genomes]
rs13147028	1.00[AFR][1000 genomes]
rs13150309	0.81[ASN][1000 genomes]
rs1566354	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2168165	0.80[ASN][1000 genomes]
rs34190647	0.81[ASN][1000 genomes]
rs34457125	0.80[ASN][1000 genomes]
rs34458168	0.80[ASN][1000 genomes]
rs34764127	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35173472	0.83[ASN][1000 genomes]
rs35820308	0.81[ASN][1000 genomes]
rs35834071	0.81[ASN][1000 genomes]
rs36076360	0.81[ASN][1000 genomes]
rs4861687	0.83[ASN][1000 genomes]
rs4861688	0.83[ASN][1000 genomes]
rs4862583	0.81[ASN][1000 genomes]
rs4862584	0.81[ASN][1000 genomes]
rs55737156	0.80[ASN][1000 genomes]
rs55926227	0.80[ASN][1000 genomes]
rs56218413	0.80[ASN][1000 genomes]
rs6830105	0.83[ASN][1000 genomes]
rs6853037	0.83[ASN][1000 genomes]
rs72707664	0.83[ASN][1000 genomes]
rs7674161	0.87[ASN][1000 genomes]
rs7692862	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028146	chr4:186503899-187338335	Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1023917	chr4:186533075-186997806	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv537420	chr4:186533075-186997806	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv830171	chr4:186610113-186789271	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv530178	chr4:186659940-187478310	Bivalent Enhancer Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv1015236	chr4:186696172-187004074	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:186771600-186791600	Weak transcription	Right Atrium	heart
2	chr4:186780000-186786800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:186780800-186786200	Weak transcription	HSMMtube	muscle
4	chr4:186780800-186786400	Weak transcription	HSMM	muscle
5	chr4:186781000-186786000	Weak transcription	Pancreas	Pancrea
6	chr4:186781000-186786800	Weak transcription	Stomach Mucosa	stomach
7	chr4:186781400-186785000	Enhancers	Fetal Heart	heart
8	chr4:186784200-186786000	Weak transcription	Left Ventricle	heart
9	chr4:186784200-186786400	Weak transcription	Gastric	stomach
10	chr4:186784200-186791400	Weak transcription	Right Ventricle	heart

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